Nilesh Patra pushed to branch master at Debian Med / pyranges
Commits: cef289a7 by Nilesh Patra at 2020-06-21T11:23:54+00:00 Add missing sources for removed bam files - - - - - 24886126 by Nilesh Patra at 2020-06-21T11:24:24+00:00 Generate files during build - - - - - 0d655bf2 by Nilesh Patra at 2020-06-21T11:25:35+00:00 Add myself to uploaders - - - - - 5 changed files: - debian/changelog - debian/control - + debian/missing-sources/control.sam - + debian/missing-sources/test_sorted.sam - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,4 +1,4 @@ -pyranges (0.0.58-1) UNRELEASED; urgency=medium +pyranges (0.0.79+ds-1) UNRELEASED; urgency=medium * Initial release (Closes: #963015) ===================================== debian/control ===================================== @@ -2,7 +2,7 @@ Source: pyranges Section: python Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Steffen Moeller <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, Nilesh Patra <[email protected]> Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, @@ -12,7 +12,8 @@ Build-Depends: debhelper-compat (= 13), python3-pytest <!nocheck>, python3-sorted-nearest, python3-hypothesis, - bedtools + bedtools, + samtools Standards-Version: 4.5.0 Homepage: https://github.com/biocore-ntnu/pyranges Vcs-Browser: https://salsa.debian.org/med-team/pyranges ===================================== debian/missing-sources/control.sam ===================================== The diff for this file was not included because it is too large. ===================================== debian/missing-sources/test_sorted.sam ===================================== The diff for this file was not included because it is too large. ===================================== debian/rules ===================================== @@ -13,15 +13,11 @@ export PYBUILD_BEFORE_TEST=cp -av {dir}/tests/*.bed {build_dir}/tests && \ %: dh $@ --with python3 --buildsystem=pybuild - -# If you need to rebuild the Sphinx documentation -# Add spinxdoc to the dh --with line -# -# And uncomment the following lines -#override_dh_auto_build: export http_proxy=127.0.0.1:9 -#override_dh_auto_build: export https_proxy=127.0.0.1:9 -#override_dh_auto_build: -# dh_auto_build -# PYTHONPATH=. python3 -m sphinx -N -bhtml docs/ build/html # HTML generator -# PYTHONPATH=. python3 -m sphinx -N -bman docs/ build/man # Manpage generator +override_dh_auto_build: + dh_auto_build + echo 'Generating corresponding files ...' + cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam + cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam + samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai + samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai View it on GitLab: https://salsa.debian.org/med-team/pyranges/-/compare/3deb6282fb86ff18bb160044afadf52cda1c1680...0d655bf2ff0bed70dea13e13e4fd5c258ca3793a -- View it on GitLab: https://salsa.debian.org/med-team/pyranges/-/compare/3deb6282fb86ff18bb160044afadf52cda1c1680...0d655bf2ff0bed70dea13e13e4fd5c258ca3793a You're receiving this email because of your account on salsa.debian.org.
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