Nilesh Patra pushed to branch master at Debian Med / elph
Commits: 8d548ed7 by Nilesh Patra at 2020-06-30T20:40:29+05:30 compat version: 13 - - - - - ff815ba9 by Nilesh Patra at 2020-06-30T20:40:56+05:30 Add "Rules-Requires-Root:no" - - - - - b1e0a93d by Nilesh Patra at 2020-06-30T20:41:40+05:30 Add autopkgtests - - - - - acf81fba by Nilesh Patra at 2020-06-30T20:44:47+05:30 Add salsa-ci.yml - - - - - 538dcca1 by Nilesh Patra at 2020-06-30T20:47:03+05:30 Bump standards version to 4.5.0 - - - - - 4 changed files: - debian/control - + debian/salsa-ci.yml - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/control ===================================== @@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Steffen Moeller <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), help2man -Standards-Version: 4.4.1 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/elph Vcs-Git: https://salsa.debian.org/med-team/elph.git Homepage: https://www.cbcb.umd.edu/software/ELPH/ +Rules-Requires-Root: no Package: elph Architecture: any ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/control ===================================== @@ -0,0 +1,4 @@ +Tests: run-unit-test +Depends: @, igor +Restrictions: allow-stderr + ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,25 @@ +#!/bin/bash +set -e + +pkg=elph +PACKAGE=igor + +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp /usr/share/doc/${PACKAGE}/examples/* -a "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" +gunzip -r * + +echo 'Test 1' +elph genomicVs_with_primers.fasta genomicDs.fasta LEN=5 -s974 -n3 +echo '================================' +echo + +echo 'Test 2' +elph genomicJs_all_curated.fasta LEN=2 -p15 -b +echo '================================' +echo 'PASS' View it on GitLab: https://salsa.debian.org/med-team/elph/-/compare/6935777d35a91aaf8327bb68278e859fab3c12ed...538dcca162e7df9baa57ee586d4156b7abf2fbe1 -- View it on GitLab: https://salsa.debian.org/med-team/elph/-/compare/6935777d35a91aaf8327bb68278e859fab3c12ed...538dcca162e7df9baa57ee586d4156b7abf2fbe1 You're receiving this email because of your account on salsa.debian.org.
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