Pranav Ballaney pushed to branch master at Debian Med / sniffles
Commits: e0a52147 by Pranav Ballaney at 2020-07-03T06:00:15+05:30 Fix INCLUDE_PATHS. Closes: #963299. - - - - - e8a8d3db by Pranav Ballaney at 2020-07-03T06:06:05+05:30 Add to Uploaders - - - - - 8ce66c5c by Pranav Ballaney at 2020-07-03T06:06:20+05:30 Install examples and docs - - - - - 8 changed files: - + debian/README.test - debian/changelog - debian/control - debian/docs - + debian/examples - debian/rules - debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,22 @@ +sniffles (1.0.11+ds-1ubuntu1) UNRELEASED; urgency=medium + + [ Afif Elghraoui ] + * Remove myself from Uploaders + + [ Steffen Moeller ] + * d/u/metadata: yamllint + + [ Steffen Möller ] + * Update metadata with ref to conda + * Update metadata / added ref to bio.tools + + [ Pranav Ballaney ] + * Fix INCLUDE_PATHS. Closes: #963299. + * Add to Uploaders + * Install examples and docs + + -- Pranav Ballaney <[email protected]> Fri, 03 Jul 2020 06:02:36 +0530 + sniffles (1.0.11+ds-1) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -1,5 +1,6 @@ Source: sniffles Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Pranav Ballaney <[email protected]> Section: science Priority: optional Build-Depends: debhelper (>= 12~), ===================================== debian/docs ===================================== @@ -1 +1,3 @@ README.md +debian/tests/run-unit-test +debian/README* \ No newline at end of file ===================================== debian/examples ===================================== @@ -0,0 +1 @@ +test_set/* \ No newline at end of file ===================================== debian/rules ===================================== @@ -4,17 +4,14 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all -INCLUDE_PATHS = /usr/include/bamtools - -space= -space+= +INCLUDE_PATHS=/usr/include/bamtools %: dh $@ override_dh_auto_configure: dh_auto_configure -- \ - -DCMAKE_INCLUDE_PATH="$(subst $(space),:,$(strip $(INCLUDE_PATHS)))" + -DCMAKE_INCLUDE_PATH="${INCLUDE_PATHS}" override_dh_auto_clean: dh_auto_clean ===================================== debian/tests/control ===================================== @@ -1,2 +1,3 @@ -Test-Command: - sniffles -m test_set/reads_region.bam -v ${AUTOPKGTEST_TMP}/test.vcf; +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,21 @@ +#!/bin/bash +set -e + +pkg=sniffles + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + # Double quote below to expand the temporary directory variable now versus + # later is on purpose. + # shellcheck disable=SC2064 + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +gunzip -r * +#do_stuff_to_test_package# +sniffles -m reads_region.bam -v test.vcf \ No newline at end of file View it on GitLab: https://salsa.debian.org/med-team/sniffles/-/compare/7d9af156d348796e5a694097750d887e19a7f536...8ce66c5cd09c8b955f6144e3ea7215b37ea631fe -- View it on GitLab: https://salsa.debian.org/med-team/sniffles/-/compare/7d9af156d348796e5a694097750d887e19a7f536...8ce66c5cd09c8b955f6144e3ea7215b37ea631fe You're receiving this email because of your account on salsa.debian.org.
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