Nilesh Patra pushed to branch master at Debian Med / mptp
Commits: 79c14271 by Nilesh Patra at 2020-07-06T16:14:12+05:30 Install relevant examples - - - - - ded00052 by Nilesh Patra at 2020-07-06T16:14:22+05:30 Add autopkgtest - - - - - a4eeced7 by Nilesh Patra at 2020-07-06T16:15:37+05:30 Drop compat, switch to debhelper-compat 13 - - - - - 404a5c49 by Nilesh Patra at 2020-07-06T16:17:47+05:30 Update upstream/metadata - - - - - ad9dd11b by Nilesh Patra at 2020-07-06T16:18:31+05:30 Add "Rules-Requires-Root:no" - - - - - de0119e9 by Nilesh Patra at 2020-07-06T16:29:01+05:30 Fix spellings - - - - - 305cf09a by Nilesh Patra at 2020-07-06T11:00:28+00:00 Add myself to uploaders - - - - - 9 changed files: - − debian/compat - debian/control - + debian/examples - debian/rules - + debian/tests/README - + debian/tests/control - + debian/tests/data/RAxML_bestTree.Clubiona - + debian/tests/run-unit-test - debian/upstream/metadata Changes: ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -1,18 +1,20 @@ Source: mptp Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Andreas Tille <[email protected]> +Uploaders: Andreas Tille <[email protected]>, + Nilesh Patra <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), bison, flex, libgsl-dev, pkg-config, bash-completion -Standards-Version: 4.1.4 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mptp Vcs-Git: https://salsa.debian.org/med-team/mptp.git Homepage: https://github.com/Pas-Kapli/mptp +Rules-Requires-Root: no Package: mptp Architecture: any ===================================== debian/examples ===================================== @@ -0,0 +1 @@ +debian/tests/data/* ===================================== debian/rules ===================================== @@ -13,3 +13,8 @@ override_dh_auto_configure: override_dh_auto_build: dh_auto_build $@ --no-parallel + +override_dh_auto_install: + sed -i 's/Supress/Suppress/' man/mptp.1 + sed -i 's/conjuction/conjunction/' man/mptp.1 + dh_auto_install ===================================== debian/tests/README ===================================== @@ -0,0 +1,5 @@ +Tests for SWeeD +================= + +The data for tests has been referenced from: + https://cme.h-its.org/exelixis/resource/download/software/sweed3.0_manual.pdf ===================================== debian/tests/control ===================================== @@ -0,0 +1,4 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr + ===================================== debian/tests/data/RAxML_bestTree.Clubiona ===================================== The diff for this file was not included because it is too large. ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,23 @@ +#!/bin/bash +set -e + +pkg=mptp + +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" +gunzip -r * + +echo 'Test 1' +mptp --ml --multi --tree_file RAxML_bestTree.Clubiona --minbr 0.0009330519 --output_file out --outgroup A,C --tree_show +echo 'PASS' + +echo 'Test 2' +mptp --mcmc 50000000 --multi --mcmc_sample 1000000 --mcmc_burnin 1000000 --tree_file RAxML_bestTree.Clubiona --output_file out +echo 'PASS' + ===================================== debian/upstream/metadata ===================================== @@ -19,3 +19,10 @@ Registry: Entry: NA - Name: bio.tools Entry: NA +--- +Archive: GitHub +Bug-Database: https://github.com/Pas-Kapli/mptp/issues +Bug-Submit: https://github.com/Pas-Kapli/mptp/issues/new +Changelog: https://github.com/Pas-Kapli/mptp/tags +Repository: https://github.com/Pas-Kapli/mptp.git +Repository-Browse: https://github.com/Pas-Kapli/mptp View it on GitLab: https://salsa.debian.org/med-team/mptp/-/compare/6c226284e03976b55ef8068c876db2b460886f9d...305cf09a1522eb2fffcbdbb9568e4844c1537a1d -- View it on GitLab: https://salsa.debian.org/med-team/mptp/-/compare/6c226284e03976b55ef8068c876db2b460886f9d...305cf09a1522eb2fffcbdbb9568e4844c1537a1d You're receiving this email because of your account on salsa.debian.org.
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