Steffen Möller pushed to branch master at Debian Med / vienna-rna
Commits:
af6e7fb0 by Steffen Moeller at 2020-07-06T18:45:08+02:00
Lintian-error-free
- - - - -
6 changed files:
- debian/copyright
- debian/librna-perl.install
- + debian/patches/addHelp2ManWrapper.patch
- debian/patches/series
- debian/patches/tutorial.patch
- debian/rules
Changes:
=====================================
debian/copyright
=====================================
@@ -92,14 +92,6 @@ Files-Excluded:
src/RNAlocmin/RNAlocmin_cmdline.h
src/RNAlocmin/config.h.in
*/autom4te.cache
- config/compile
- config/depcomp
- config/install-sh
- config/ltmain.sh
- config/missing
- config/test-driver
- config/texinfo.tex
- configure
doc/refman-html
install-sh
interfaces/Perl/RNA.pm
@@ -143,7 +135,7 @@ License: non-free
Files: src/ViennaRNA/naview.c
Copyright: 1988 Robert E. Bruccoleri
-License: non-free
+License: non-commercial
Copying of this software, in whole or in part, is permitted
provided that the copies are not made for commercial purposes,
appropriate credit for the use of the software is given, this
@@ -167,9 +159,9 @@ License: non-free_no-fee
Files: debian/*
Copyright: 2011 Alex Mestiashvili <[email protected]>
- 2011 Andreas Tille <[email protected]>
- 2014 Olivier Sallou <[email protected]>
- 2019 Steffen Moeller <[email protected]>
+ 2011 Andreas Tille <[email protected]>
+ 2014 Olivier Sallou <[email protected]>
+ 2019-2020 Steffen Moeller <[email protected]>
License: GPL-2+
This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
=====================================
debian/librna-perl.install
=====================================
@@ -1 +1 @@
-usr/share/perl
+usr/share/perl/*/RNA usr/share/perl5
=====================================
debian/patches/addHelp2ManWrapper.patch
=====================================
@@ -0,0 +1,19 @@
+Index: vienna-rna/man/help2manWrapper.sh
+===================================================================
+--- /dev/null
++++ vienna-rna/man/help2manWrapper.sh
+@@ -0,0 +1,14 @@
++#!/bin/bash
++#
++
++HELP2MAN=$1
++PROGNAME=`basename $2 .ggo`
++PROGPATH=`dirname $2`
++
++${HELP2MAN} \
++ -N \
++ --help-option=--detailed-help \
++ --opt-include=./include/ref_package.inc \
++ --opt-include=./include/${PROGNAME}.inc \
++ --opt-include=./include/ref_energy_par.inc \
++ "./cmdlopt.sh ${PROGPATH}/${PROGNAME}"
=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
g2.patch
tutorial.patch
+addHelp2ManWrapper.patch
=====================================
debian/patches/tutorial.patch
=====================================
@@ -2,7 +2,7 @@ Index: vienna-rna/RNA-Tutorial/Makefile.am
===================================================================
--- vienna-rna.orig/RNA-Tutorial/Makefile.am
+++ vienna-rna/RNA-Tutorial/Makefile.am
-@@ -116,11 +116,11 @@ tut_data_DATA = $(srcdir)/Data/5S.seq \
+@@ -111,11 +111,11 @@ tut_data_DATA = $(srcdir)/Data/5S.seq \
$(srcdir)/Data/RNaseP.aln \
$(srcdir)/Data/RNaseP.dnd
=====================================
debian/rules
=====================================
@@ -7,6 +7,7 @@
override_dh_auto_configure:
CFLAGS="-I/usr/include/json-c/ -I/usr/include/libsvm/"
CXXFLAGS="-I/usr/include/json-c/ -I/usr/include/libsvm/" dh_auto_configure --
--with-cluster --without-python --with-python3 --without-forester --without-doc
--without-tutorial
+ if [ -r man/help2manWrapper.sh ]; then chmod +x man/help2manWrapper.sh;
fi
override_dh_auto_build:
if [ ! -d src/cthreadpool ]; then \
View it on GitLab:
https://salsa.debian.org/med-team/vienna-rna/-/commit/af6e7fb08034c5a49904c95625e0302dc9c08842
--
View it on GitLab:
https://salsa.debian.org/med-team/vienna-rna/-/commit/af6e7fb08034c5a49904c95625e0302dc9c08842
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