Nilesh Patra pushed to branch upstream at Debian Med / vcfanno
Commits: 10302f9a by Nilesh Patra at 2020-07-17T19:24:15+00:00 New upstream version 0.3.2+ds - - - - - 24 changed files: - − docs/examples/gff_sv/genes.gff3.gz.tbi - − example/ex.bam - − example/ex.bam.bai - − example/exac.vcf.gz.tbi - − example/fitcons.bed.gz.tbi - − tests/astar/astar.anno.vcf.gz.tbi - − tests/by_alt_float/annotation.tsv.gz.tbi - − tests/citest/at/testexon.bed.gz.tbi - − tests/citest/dummyexons.bed.gz.tbi - − tests/data/multiple-alts.vcf.gz.tbi - − tests/data/number.vcf.gz.tbi - − tests/dbnsfp/dbNSFP_ex.txt.gz.tbi - − tests/dbnsfp/dbNSFP_example.txt.gz.tbi - − tests/id-test/cosmic.small.vcf.gz.tbi - − tests/id-test/dbsnp.small.vcf.gz.tbi - − tests/id-test/small.vcf.gz.tbi - − tests/multiple-alts/ma-db.vcf.gz.tbi - − tests/notbgz/gno.vcf.gz.tbi - − tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi - − tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi - − tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz.tbi - − tests/ref-alt-test/tmp_annotation.txt.gz.tbi - − tests/ref-alt-test/tmp_calls.vcf.gz.tbi - − tests/testVA/test-gnomad.vcf.gz.tbi Changes: ===================================== docs/examples/gff_sv/genes.gff3.gz.tbi deleted ===================================== Binary files a/docs/examples/gff_sv/genes.gff3.gz.tbi and /dev/null differ ===================================== example/ex.bam deleted ===================================== Binary files a/example/ex.bam and /dev/null differ ===================================== example/ex.bam.bai deleted ===================================== Binary files a/example/ex.bam.bai and /dev/null differ ===================================== example/exac.vcf.gz.tbi deleted ===================================== Binary files a/example/exac.vcf.gz.tbi and /dev/null differ ===================================== example/fitcons.bed.gz.tbi deleted ===================================== Binary files a/example/fitcons.bed.gz.tbi and /dev/null differ 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tests/id-test/small.vcf.gz.tbi deleted ===================================== Binary files a/tests/id-test/small.vcf.gz.tbi and /dev/null differ ===================================== tests/multiple-alts/ma-db.vcf.gz.tbi deleted ===================================== Binary files a/tests/multiple-alts/ma-db.vcf.gz.tbi and /dev/null differ ===================================== tests/notbgz/gno.vcf.gz.tbi deleted ===================================== Binary files a/tests/notbgz/gno.vcf.gz.tbi and /dev/null differ ===================================== tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi deleted ===================================== Binary files a/tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi and /dev/null differ ===================================== tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi deleted ===================================== Binary files a/tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi and /dev/null differ ===================================== tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz.tbi deleted ===================================== Binary files a/tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz.tbi and /dev/null differ ===================================== tests/ref-alt-test/tmp_annotation.txt.gz.tbi deleted ===================================== Binary files a/tests/ref-alt-test/tmp_annotation.txt.gz.tbi and /dev/null differ ===================================== tests/ref-alt-test/tmp_calls.vcf.gz.tbi deleted ===================================== Binary files a/tests/ref-alt-test/tmp_calls.vcf.gz.tbi and /dev/null differ ===================================== tests/testVA/test-gnomad.vcf.gz.tbi deleted ===================================== Binary files a/tests/testVA/test-gnomad.vcf.gz.tbi and /dev/null differ View it on GitLab: https://salsa.debian.org/med-team/vcfanno/-/commit/10302f9a4f0706518b1267e5ac1191e53b423219 -- View it on GitLab: 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