Pranav Ballaney pushed to branch master at Debian Med / king-probe
Commits: d8b145dc by Pranav Ballaney at 2020-07-27T23:22:04+05:30 Replace reference files with their hashes - - - - - 10 changed files: - debian/README.test - debian/copyright - debian/examples - − debian/tests/ref/6ins.dotinfo.table.gz - − debian/tests/ref/6ins.kin.gz - − debian/tests/ref/6ins.rawinfo.table.gz - − debian/tests/ref/6ins.surfacedots.kin.gz - − debian/tests/ref/6insEF.kin.gz - − debian/tests/ref/6ins_1zni.kin.gz - debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -16,7 +16,3 @@ Source: https://www.rcsb.org/structure/6INS Files: debian/tests/data/1zni.pdb1.gz Source: https://www.rcsb.org/structure/1ZNI -Files: debian/tests/ref/* -These files were produced by running the data files - listed above through king-probe as described in - run-unit-test. ===================================== debian/copyright ===================================== @@ -16,13 +16,6 @@ Source: https://www.rcsb.org/structure/6INS Files: debian/tests/data/1zni.pdb1.gz Source: https://www.rcsb.org/structure/1ZNI -Files: debian/tests/ref/* -Copyright: 2020 Pranav Ballaney <[email protected]> -License: probe -Comment: These files were produced by running the data files - listed above through king-probe as described in - debian/tests/run-unit-test - License: probe This is free software and the source code is freely available. You are free to redistribute or modify under the ===================================== debian/examples ===================================== @@ -1,2 +1 @@ -debian/tests/data -debian/tests/ref \ No newline at end of file +debian/tests/data \ No newline at end of file ===================================== debian/tests/ref/6ins.dotinfo.table.gz deleted ===================================== Binary files a/debian/tests/ref/6ins.dotinfo.table.gz and /dev/null differ ===================================== debian/tests/ref/6ins.kin.gz deleted ===================================== Binary files a/debian/tests/ref/6ins.kin.gz and /dev/null differ ===================================== debian/tests/ref/6ins.rawinfo.table.gz deleted ===================================== Binary files a/debian/tests/ref/6ins.rawinfo.table.gz and /dev/null differ ===================================== debian/tests/ref/6ins.surfacedots.kin.gz deleted ===================================== Binary files a/debian/tests/ref/6ins.surfacedots.kin.gz and /dev/null differ ===================================== debian/tests/ref/6insEF.kin.gz deleted ===================================== Binary files a/debian/tests/ref/6insEF.kin.gz and /dev/null differ ===================================== debian/tests/ref/6ins_1zni.kin.gz deleted ===================================== Binary files a/debian/tests/ref/6ins_1zni.kin.gz and /dev/null differ ===================================== debian/tests/run-unit-test ===================================== @@ -17,54 +17,52 @@ cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" cd "${AUTOPKGTEST_TMP}" gunzip -r * -ls -R cd data -#do_stuff_to_test_package# + echo -e "\e[93m\e[1mTest 1\e[0m" king-probe 6ins.pdb1 >> 6ins.kin tail +2 6ins.kin > 6ins.kin.head -tail +2 ../ref/6ins.kin > ../ref/6ins.kin.head -diff 6ins.kin.head ../ref/6ins.kin.head +echo "2e8e38fca908f21e53f47bd3a9411219 6ins.kin.head" > checksum +md5sum --check checksum echo -e "\e[92m\e[1mPassed\e[0m" echo echo -e "\e[93m\e[1mTest 2\e[0m" king-probe -count -self all 6ins.pdb1 > 6ins.dotinfo.table tail +2 6ins.dotinfo.table > 6ins.dotinfo.table.head -tail +2 ../ref/6ins.dotinfo.table > ../ref/6ins.dotinfo.table.head -diff 6ins.dotinfo.table.head ../ref/6ins.dotinfo.table.head +echo "23e6de91706f44a691ab0571ea50bcbb 6ins.dotinfo.table.head" > checksum +md5sum --check checksum echo -e "\e[92m\e[1mPassed\e[0m" echo echo -e "\e[93m\e[1mTest 3\e[0m" king-probe -unformated -self "all" 6ins.pdb1 > 6ins.rawinfo.table tail +2 6ins.rawinfo.table > 6ins.rawinfo.table.head -tail +2 ../ref/6ins.rawinfo.table > ../ref/6ins.rawinfo.table.head -diff 6ins.rawinfo.table.head ../ref/6ins.rawinfo.table.head +echo "2a063119f359eb3ac5728788b372c8db 6ins.rawinfo.table.head" > checksum +md5sum --check checksum echo -e "\e[92m\e[1mPassed\e[0m" echo echo -e "\e[93m\e[1mTest 4\e[0m" king-probe -out all 6ins.pdb1 >> 6ins.surfacedots.kin tail +2 6ins.surfacedots.kin > 6ins.surfacedots.kin.head -tail +2 ../ref/6ins.surfacedots.kin > ../ref/6ins.surfacedots.kin.head -diff 6ins.surfacedots.kin.head ../ref/6ins.surfacedots.kin.head +echo "bcea879aa884d7686e5213a9e9c935b4 6ins.surfacedots.kin.head" > checksum +md5sum --check checksum echo -e "\e[92m\e[1mPassed\e[0m" echo echo -e "\e[93m\e[1mTest 5\e[0m" king-probe -both chainE chainF 6ins.pdb1 >> 6insEF.kin tail +2 6insEF.kin > 6insEF.kin.head -tail +2 ../ref/6insEF.kin > ../ref/6insEF.kin.head -diff 6insEF.kin.head ../ref/6insEF.kin.head +echo "29f07cd1e66b932f66db395264a6160a 6insEF.kin.head" > checksum +md5sum --check checksum echo -e "\e[92m\e[1mPassed\e[0m" echo echo -e "\e[93m\e[1mTest 6\e[0m" king-probe -once all all 6ins.pdb1 1zni.pdb1 >> 6ins_1zni.kin tail +2 6ins_1zni.kin > 6ins_1zni.kin.head -tail +2 ../ref/6ins_1zni.kin > ../ref/6ins_1zni.kin.head -diff 6ins_1zni.kin.head ../ref/6ins_1zni.kin.head +echo "b14361cd9e8fe621e74174bc24042adb 6ins_1zni.kin.head" > checksum +md5sum --check checksum echo -e "\e[92m\e[1mPassed\e[0m" echo - View it on GitLab: https://salsa.debian.org/med-team/king-probe/-/commit/d8b145dc2a9d6cf2dc305b9fce70aeec00e22fa6 -- View it on GitLab: https://salsa.debian.org/med-team/king-probe/-/commit/d8b145dc2a9d6cf2dc305b9fce70aeec00e22fa6 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
