Nilesh Patra pushed to branch master at Debian Med / seqkit
Commits: 4b78cfdf by Nilesh Patra at 2020-08-03T23:09:11+05:30 Information on repacked bam files - - - - - 893fc0e1 by Nilesh Patra at 2020-08-03T23:10:52+05:30 Add information about test - - - - - 2 changed files: - + debian/README.source - + debian/README.test Changes: ===================================== debian/README.source ===================================== @@ -0,0 +1,23 @@ +Upstream provides binary files without sources for: + +* tests/pcs109_5k_prim.sam +* tests/pcs109_5k.sam +* tests/pcs109_5k_spliced.sam + +These have been converted to corresponding text (.sam) files with command: +* samtools view -h -o <out>.sam <in>.bam + +And the corresponding *.sam files are added to: debian/missing-sources + +They can be generated back with the following commands: +* cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam +* cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam +* cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam +* samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai +* samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai +* samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai + +These commands are also being run in debian/rules since these binaries are needed for autopkgtests. + + -- Nilesh Patra <[email protected]> Mon, 03 Aug 2020 21:49:28 +0530 + ===================================== debian/README.test ===================================== @@ -0,0 +1,9 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. + View it on GitLab: https://salsa.debian.org/med-team/seqkit/-/compare/edacb01b1eae42e2b35167998975ec5a497a78c7...893fc0e19772be089f4370ec99f9cf4b76f1f6cc -- View it on GitLab: https://salsa.debian.org/med-team/seqkit/-/compare/edacb01b1eae42e2b35167998975ec5a497a78c7...893fc0e19772be089f4370ec99f9cf4b76f1f6cc You're receiving this email because of your account on salsa.debian.org.
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