Nilesh Patra pushed to branch master at Debian Med / fast5-research
Commits: 2de3f41f by Nilesh Patra at 2020-08-05T02:14:12+05:30 Add autopkgtests - - - - - d801c273 by Nilesh Patra at 2020-08-05T02:19:53+05:30 Change arch to all - - - - - 25c78e4f by Nilesh Patra at 2020-08-04T20:51:31+00:00 Run wrap-and-sort - - - - - 3 changed files: - debian/control - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/control ===================================== @@ -3,15 +3,16 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Shayan Doust <[email protected]> Section: science Priority: optional +Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, - python3-setuptools, python3-h5py, + python3-nose, python3-numpy, python3-progressbar, python3-pysam, - python3-nose, + python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme Standards-Version: 4.5.0 @@ -21,10 +22,8 @@ Homepage: https://github.com/nanoporetech/fast5_research Rules-Requires-Root: no Package: fast5-research -Architecture: any -Depends: ${python3:Depends}, - ${misc:Depends}, - python3-fast5-research +Architecture: all +Depends: python3-fast5-research, ${misc:Depends}, ${python3:Depends} Description: command line executable tools for python3-fast5-research Python fast5 reading and writing functionality provided by ONT Research. This package comprises an API to HDF containers used by the research @@ -37,14 +36,14 @@ Description: command line executable tools for python3-fast5-research python3-fast5-research. Package: python3-fast5-research -Architecture: any +Architecture: all Section: python -Depends: ${python3:Depends}, - ${misc:Depends}, - python3-h5py, +Depends: python3-h5py, python3-numpy, python3-progressbar, - python3-pysam + python3-pysam, + ${misc:Depends}, + ${python3:Depends} Description: Python fast5 reading and writing functionality provided by ONT Research This package comprises an API to HDF containers used by the research groups within Oxford Nanopore Technologies. It complements the official @@ -57,8 +56,7 @@ Description: Python fast5 reading and writing functionality provided by ONT Rese Package: fast5-research-doc Architecture: all Section: doc -Depends: ${sphinxdoc:Depends}, - ${misc:Depends} +Depends: ${misc:Depends}, ${sphinxdoc:Depends} Recommends: fast5-research Description: documentation for fast5-research and the python3-fast5-research Python fast5 reading and writing functionality provided by ONT Research. ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: python3-all, python3-nose, @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,8 @@ +#!/bin/bash +set -e + +for py in $(py3versions -r 2> /dev/null) +do + $py -m nose -v --exclude=test_fast5_basecalling_and_mapping.py +done + View it on GitLab: https://salsa.debian.org/med-team/fast5-research/-/compare/d514d956031f678e5ad1d92240873ef4e47c8de0...25c78e4fa99630f7ec12fc66a90d8838a4990915 -- View it on GitLab: https://salsa.debian.org/med-team/fast5-research/-/compare/d514d956031f678e5ad1d92240873ef4e47c8de0...25c78e4fa99630f7ec12fc66a90d8838a4990915 You're receiving this email because of your account on salsa.debian.org.
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