Nilesh Patra pushed to branch master at Debian Med / wtdbg2
Commits: 3f083959 by Nilesh Patra at 2020-08-09T21:24:28+05:30 Finalize autopkgtest - - - - - 1 changed file: - debian/tests/run-unit-test Changes: ===================================== debian/tests/run-unit-test ===================================== @@ -27,9 +27,3 @@ wtpoa-cns -t 16 -i dbg.ctg.lay.gz -fo dbg.raw.fa [ -s dbg.raw.fa ] || exit 1 echo "PASS" -# polish consensus, not necessary if you want to polish the assemblies using other tools -minimap2 -t16 -ax map-pb -r2k dbg.raw.fa pacbio_filtered.fastq | samtools sort -@4 >dbg.bam -samtools view -F0x900 dbg.bam | wtpoa-cns -t 16 -d dbg.raw.fa -i - -fo dbg.cns.fa -[ -s dbg.cns.fa ] || exit 1 -echo "PASS" - View it on GitLab: https://salsa.debian.org/med-team/wtdbg2/-/commit/3f0839596fec4271a452d11c13e996aa6b60d7bd -- View it on GitLab: https://salsa.debian.org/med-team/wtdbg2/-/commit/3f0839596fec4271a452d11c13e996aa6b60d7bd You're receiving this email because of your account on salsa.debian.org.
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