Nilesh Patra pushed to branch master at Debian Med / repeatmasker-recon
Commits: db4471fb by Nilesh Patra at 2020-08-11T16:47:58+05:30 Add autopkgtests - - - - - bc8ada66 by Nilesh Patra at 2020-08-11T16:54:28+05:30 Fix watch URL - - - - - 4ed352f9 by Nilesh Patra at 2020-08-11T16:55:20+05:30 compat version: 13, standards version: 4.5.0 - - - - - 458dd1e4 by Nilesh Patra at 2020-08-11T16:55:43+05:30 Add "Rules-Requires-Root:no" - - - - - 59c62096 by Nilesh Patra at 2020-08-11T17:02:27+05:30 Update URLs - - - - - 6 changed files: - debian/control - debian/copyright - + debian/tests/control - + debian/tests/run-unit-test - debian/upstream/metadata - debian/watch Changes: ===================================== debian/control ===================================== @@ -4,12 +4,13 @@ Uploaders: Olivier Sallou <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), help2man -Standards-Version: 4.1.5 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git Homepage: http://www.repeatmasker.org/ +Rules-Requires-Root: no Package: repeatmasker-recon Architecture: any ===================================== debian/copyright ===================================== @@ -1,6 +1,6 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: RECONF -Source: http://www.repeatmasker.org/RECON-1.08.tar.gz +Source: http://www.repeatmasker.org/RepeatModeler/RECON-1.08.tar.gz Files: * Copyright: 2001 Washington University School of Medicine ===================================== debian/tests/control ===================================== @@ -0,0 +1,4 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr + ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,22 @@ +#!/bin/bash +set -e + +pkg=repeatmasker-recon + +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" +gunzip -r * + +cp **/**/* -a . + +echo 'Test Functionality' +repeatmasker-recon seqnames elegans.msps +awk '$1==6' summary/eles +echo 'PASS' + ===================================== debian/upstream/metadata ===================================== @@ -10,5 +10,5 @@ Reference: Pages: 1269-76 DOI: 10.1101/gr.88502 PMID: 12176934 - URL: http://genome.cshlp.org/content/12/8/1269.short - ePrint: http://genome.cshlp.org/content/12/8/1269.full.pdf+html + URL: https://genome.cshlp.org/content/12/8/1269.short + ePrint: https://genome.cshlp.org/content/12/8/1269.full.pdf+html ===================================== debian/watch ===================================== @@ -1,3 +1,3 @@ version=3 -http://www.repeatmasker.org/RECON-(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) +http://www.repeatmasker.org/RepeatModeler/RECON-(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) View it on GitLab: https://salsa.debian.org/med-team/repeatmasker-recon/-/compare/7d7a68e538bd5395661c4ceb17398f552262b7c0...59c62096b03ff52f845aa7a4ed627f2f1a3965d4 -- View it on GitLab: https://salsa.debian.org/med-team/repeatmasker-recon/-/compare/7d7a68e538bd5395661c4ceb17398f552262b7c0...59c62096b03ff52f845aa7a4ed627f2f1a3965d4 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
