Pranav Ballaney pushed to branch master at Debian Med / rampler
Commits: aa67b58e by Pranav Ballaney at 2020-08-24T14:13:24+05:30 Add autopkgtests - - - - - e6916668 by Pranav Ballaney at 2020-08-24T14:13:27+05:30 Install docs - - - - - 6af62499 by Pranav Ballaney at 2020-08-24T14:13:58+05:30 Add Pranav Ballaney to Uploaders - - - - - 853dd732 by Pranav Ballaney at 2020-08-24T14:14:18+05:30 Update changelog - - - - - 44e9d1ab by Pranav Ballaney at 2020-08-24T14:16:36+05:30 routine-update: Standards-Version: 4.5.0 - - - - - 966aa5c7 by Pranav Ballaney at 2020-08-24T14:16:36+05:30 routine-update: debhelper-compat 13 - - - - - 997042df by Pranav Ballaney at 2020-08-24T14:17:00+05:30 routine-update: Add salsa-ci file - - - - - 99376870 by Pranav Ballaney at 2020-08-24T14:17:00+05:30 routine-update: Rules-Requires-Root: no - - - - - a3e40f58 by Pranav Ballaney at 2020-08-24T14:17:06+05:30 Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. - - - - - e3dcb1e7 by Pranav Ballaney at 2020-08-24T14:17:16+05:30 routine-update: Ready to upload to unstable - - - - - 8 changed files: - + debian/README.test - debian/changelog - debian/control - + debian/docs - + debian/salsa-ci.yml - + debian/tests/control - + debian/tests/run-unit-test - debian/upstream/metadata Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,22 @@ +rampler (1.1.1-2) unstable; urgency=medium + + [ Steffen Möller ] + * Update metadata with ref to conda + * Update metadata - corrected conda ref - NA + + [ Pranav Ballaney ] + * Add autopkgtests + * Install docs + * Add Pranav Ballaney to Uploaders + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, + Repository-Browse. + + -- Pranav Ballaney <[email protected]> Mon, 24 Aug 2020 14:17:07 +0530 + rampler (1.1.1-1) unstable; urgency=medium * New upstream version ===================================== debian/control ===================================== @@ -1,15 +1,17 @@ Source: rampler Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Andreas Tille <[email protected]> +Uploaders: Andreas Tille <[email protected]>, + Pranav Ballaney <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), cmake, libbioparser-dev -Standards-Version: 4.4.0 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/rampler Vcs-Git: https://salsa.debian.org/med-team/rampler.git Homepage: https://github.com/rvaser/rampler +Rules-Requires-Root: no Package: rampler Architecture: any ===================================== debian/docs ===================================== @@ -0,0 +1,3 @@ +README* +debian/README* +debian/tests/run-unit-test \ No newline at end of file ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, dazzdb +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,37 @@ +#!/bin/bash +set -e + +pkg=rampler + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + # Double quote below to expand the temporary directory variable now versus + # later is on purpose. + # shellcheck disable=SC2064 + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +# cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +#do_stuff_to_test_package# + +echo -e "\e[93m\e[1mPreparation\e[0m" +rangen 0.1 -r2020 >R.fasta +fasta2DAM R R.fasta +dsimulator R -c20. -r2020 >G.fasta +rm R.dam .R.bps .R.hdr .R.idx R.fasta +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 1\e[0m" +rampler split G.fasta 500000 +echo -e "\e[92m\e[1mPassed\e[0m" +echo + +echo -e "\e[93m\e[1mTest 2\e[0m" +rampler subsample G.fasta 50000 5 +echo -e "\e[92m\e[1mPassed\e[0m" +echo ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,5 @@ +Bug-Database: https://github.com/rvaser/rampler/issues +Bug-Submit: https://github.com/rvaser/rampler/issues/new Registry: - Name: OMICtools Entry: OMICS_33016 @@ -7,3 +9,5 @@ Registry: Entry: NA - Name: conda:bioconda Entry: NA +Repository: https://github.com/rvaser/rampler.git +Repository-Browse: https://github.com/rvaser/rampler View it on GitLab: https://salsa.debian.org/med-team/rampler/-/compare/047a01f1bf80e5ea0b87a6423564fbe380e3a65f...e3dcb1e77d40797935110401abb5f7a1de83b686 -- View it on GitLab: https://salsa.debian.org/med-team/rampler/-/compare/047a01f1bf80e5ea0b87a6423564fbe380e3a65f...e3dcb1e77d40797935110401abb5f7a1de83b686 You're receiving this email because of your account on salsa.debian.org.
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