Andreas Tille pushed to branch master at Debian Med / paleomix
Commits:
7f5d705d by Andreas Tille at 2020-09-01T10:27:44+02:00
Renamed lintian tag
- - - - -
d7334280 by Andreas Tille at 2020-09-01T10:31:47+02:00
Fix manpage
- - - - -
775d3d76 by Andreas Tille at 2020-09-01T10:42:15+02:00
Fix autopkgtest
- - - - -
3 changed files:
- debian/lintian-overrides
- debian/mans/phylo_pipeline.1
- debian/tests/run-unit-test
Changes:
=====================================
debian/lintian-overrides
=====================================
@@ -1,4 +1,4 @@
# Those zero byte files are needed in tests and there was extra means done to
move these into the package
paleomix: zero-byte-file-in-doc-directory usr/share/doc/paleomix/tests/data/*
# The different compression methods are part of the test suite
-paleomix: duplicated-compressed-file
usr/share/doc/paleomix/tests/data/fasta_file.fasta*
+paleomix: compressed-duplicate
usr/share/doc/paleomix/tests/data/fasta_file.fasta*
=====================================
debian/mans/phylo_pipeline.1
=====================================
@@ -99,7 +99,7 @@ tree is printed, and no tasks are executed.
.TP
\fB\-\-temp\-root\fR=\fI\,TEMP_ROOT\/\fR
Location for temporary files and folders
-[/tmp/tillea/phylo_pipeline]
+[/tmp/USERNAME/phylo_pipeline]
.TP
\fB\-\-samples\-root\fR=\fI\,SAMPLES_ROOT\/\fR
Location of BAM files for each sample [./data/samples]
=====================================
debian/tests/run-unit-test
=====================================
@@ -9,6 +9,7 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then
fi
cp -a /usr/share/doc/${pkg}/tests $AUTOPKGTEST_TMP
+cp -a /usr/share/doc/${pkg}/README.rst $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
@@ -22,4 +23,4 @@ done
## tox needs to run in source dir and relies on files only available in full
source
# tox
## so rather run some test that is part of the tox test suite
-nosetests --with-coverage --cover-erase --cover-inclusive --cover-tests
--cover-package paleomix .
\ No newline at end of file
+pytest-3
View it on GitLab:
https://salsa.debian.org/med-team/paleomix/-/compare/57a985f8ecd748125d4092744117b65543cb271b...775d3d767543959e8f91f04033a94cc2a5401c82
--
View it on GitLab:
https://salsa.debian.org/med-team/paleomix/-/compare/57a985f8ecd748125d4092744117b65543cb271b...775d3d767543959e8f91f04033a94cc2a5401c82
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