Étienne Mollier pushed to branch master at Debian Med / python-biopython
Commits: f22b5861 by Étienne Mollier at 2020-09-11T00:16:53+02:00 forward phyml test patch upstream - - - - - 083b8a55 by Étienne Mollier at 2020-09-11T22:49:21+02:00 add spelling-error-in-binaries.patch - - - - - 68e959e2 by Étienne Mollier at 2020-09-11T23:18:30+02:00 added privacy_breach_ie9.patch - - - - - 4 changed files: - + debian/patches/privacy_breach_ie9.patch - debian/patches/series - + debian/patches/spelling-error-in-binaries.patch - debian/patches/stabilize-phyml-test.patch Changes: ===================================== debian/patches/privacy_breach_ie9.patch ===================================== @@ -0,0 +1,22 @@ +Description: fix privacy breach with html5shiv + Actually the script called is commented out, except when reading the page with + Internet Explorer 9. This patch makes sure the script is not called at all, + even if it is very unlikely that HTML document installed in Debian will ever + be read with this browser. +Author: Étienne Mollier <[email protected]> +Forwarded: not-needed +Last-Update: 2020-09-11 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-biopython.orig/Doc/cookbook/Restriction/Restriction.html ++++ python-biopython/Doc/cookbook/Restriction/Restriction.html +@@ -75,9 +75,6 @@ + code span.vs { color: #4070a0; } /* VerbatimString */ + code span.wa { color: #60a0b0; font-weight: bold; font-style: italic; } /* Warning */ + </style> +- <!--[if lt IE 9]> +- <script src="//cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.3/html5shiv-printshiv.min.js"></script> +- <![endif]--> + </head> + <body> + <h1 id="working-with-restriction-enzymes">Working with restriction enzymes</h1> ===================================== debian/patches/series ===================================== @@ -1,5 +1,7 @@ remove_mathml-qname.patch privacy_breach.patch +privacy_breach_ie9.patch blastdbv4-impl.patch fix-use-of-unversionned-python.patch stabilize-phyml-test.patch +spelling-error-in-binaries.patch ===================================== debian/patches/spelling-error-in-binaries.patch ===================================== @@ -0,0 +1,20 @@ +Description: fix lintian message spelling-error-in-binary + As a side note, lintian reports another spelling error "algorith" in another + binary, but the matching source code does not show any such issue in strings, + so it might have been a string sliced at a bad place by the compiler. +Author: Étienne Mollier <[email protected]> +Forwarded: no +Last-Update: 2020-09-11 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-biopython.orig/Bio/Cluster/clustermodule.c ++++ python-biopython/Bio/Cluster/clustermodule.c +@@ -2132,7 +2132,7 @@ + "\n" + " - transpose: if equal to 0: the distances between rows are\n" + " calculated;\n" +-" if equal to 1, the distances beteeen columns are calculated.\n" ++" if equal to 1, the distances between columns are calculated.\n" + "\n" + " - dist: specifies the distance function to be used:\n" + "\n" ===================================== debian/patches/stabilize-phyml-test.patch ===================================== @@ -5,8 +5,8 @@ Description: stabilize the test involving phyml environment variable PHYMLCPUS, allows one to avoid the message "No protocol specified" in the error output, which interferes with the version test. Author: Étienne Mollier <[email protected]> -Forwarded: no -Last-Update: 2020-09-10 +Forwarded: https://github.com/biopython/biopython/pull/3268 +Last-Update: 2020-09-11 --- This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- python-biopython.orig/Tests/test_phyml_tool.py View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/891939b0eb21c2cc0bddbc7738dbe5f7ba377221...68e959e2deccce41315988c2744262db15065ddc -- View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/891939b0eb21c2cc0bddbc7738dbe5f7ba377221...68e959e2deccce41315988c2744262db15065ddc You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
