Shruti Sridhar pushed to branch master at Debian Med / patman
Commits: 290450a1 by Shruti Sridhar at 2020-09-20T23:43:45+05:30 Add data for autopkgtests - - - - - 229294a1 by Shruti Sridhar at 2020-09-20T23:44:25+05:30 Add autopkgtests - - - - - b68fdf60 by Shruti Sridhar at 2020-09-20T23:45:13+05:30 Install examples and docs - - - - - a1b9776a by Shruti Sridhar at 2020-09-20T23:57:11+05:30 Update changelog - - - - - 8 changed files: - + debian/README.test - debian/changelog - debian/docs - + debian/examples - + debian/tests/control - + debian/tests/data/database - + debian/tests/data/fasta - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,14 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. + +Notes on the files used for testing +──────────────────────────────────────── +Files: debian/tests/data/* +Source: https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2?report=fasta + ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +patman (1.2.2+dfsg-7) UNRELEASED; urgency=medium + + [ Steffen Moeller ] + * d/u/metadata: yamllint + + [ Shruti Sridhar ] + * Add data for autopkgtests + * Add autopkgtests + * Install examples and docs + + -- Shruti Sridhar <[email protected]> Sun, 20 Sep 2020 23:54:59 +0530 + patman (1.2.2+dfsg-6) unstable; urgency=medium [ Helmut Grohne ] ===================================== debian/docs ===================================== @@ -1 +1,2 @@ README +debian/README* \ No newline at end of file ===================================== debian/examples ===================================== @@ -0,0 +1 @@ +debian/tests/data/* \ No newline at end of file ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/data/database ===================================== @@ -0,0 +1,24 @@ +>NC_045512.2 Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1,first 23 lines +ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA +CGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAAC +TAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG +TTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTC +CCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTAC +GTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGG +CTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGAT +GCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTC +GTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGGCGAAATACCAGTGGCTTACCGCAAGGTTCT +TCTTCGTAAGAACGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTA +GGCGACGAGCTTGGCACTGATCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTG +TTACCCGTGAACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGG +CCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGCACGTGCTGGTAAAGCTTCATGCACTTTG +TCCGAACAACTGGACTTTATTGACACTAAGAGGGGTGTATACTGCTGCCGTGAACATGAGCATGAAATTG +CTTGGTACACGGAACGTTCTGAAAAGAGCTATGAATTGCAGACACCTTTTGAAATTAAATTGGCAAAGAA +ATTTGACACCTTCAATGGGGAATGTCCAAATTTTGTATTTCCCTTAAATTCCATAATCAAGACTATTCAA +CCAAGGGTTGAAAAGAAAAAGCTTGATGGCTTTATGGGTAGAATTCGATCTGTCTATCCAGTTGCGTCAC +CAAATGAATGCAACCAAATGTGCCTTTCAACTCTCATGAAGTGTGATCATTGTGGTGAAACTTCATGGCA +GACGGGCGATTTTGTTAAAGCCACTTGCGAATTTTGTGGCACTGAGAATTTGACTAAAGAAGGTGCCACT +ACTTGTGGTTACTTACCCCAAAATGCTGTTGTTAAAATTTATTGTCCAGCATGTCACAATTCAGAAGTAG +GACCTGAGCATAGTCTTGCCGAATACCATAATGAATCTGGCTTGAAAACCATTCTTCGTAAGGGTGGTCG +CACTATTGCCTTTGGAGGCTGTGTGTTCTCTTATGTTGGTTGCCATAACAAGTGTGCCTATTGGGTTCCA +CGTGCTAGCGCTAACATAGGTTGTAACCATACAGGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACA ===================================== debian/tests/data/fasta ===================================== @@ -0,0 +1,2 @@ +>NC_045512.2_substring +GTCCAACTCAGTTTGCCTGTTTTACAGGT ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,23 @@ +#!/bin/bash +set -e + +pkg=patman + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +#do_stuff_to_test_package# + +patman -P fasta -D database -o output -v + +echo "d9ae09a7726e3318af0de3200b8e6247 output" >> checksums + +md5sum --check checksums + View it on GitLab: https://salsa.debian.org/med-team/patman/-/compare/68578247aa2f2e963a9c2784a4c3e9e0d0f5af1e...a1b9776af16c4d913fb24211a3a6579aeee23d02 -- View it on GitLab: https://salsa.debian.org/med-team/patman/-/compare/68578247aa2f2e963a9c2784a4c3e9e0d0f5af1e...a1b9776af16c4d913fb24211a3a6579aeee23d02 You're receiving this email because of your account on salsa.debian.org.
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