Steffen Möller pushed to branch upstream at Debian Med / drop-seq
Commits: aa4f6adc by Steffen Moeller at 2020-09-20T20:15:47+02:00 New upstream version 2.4.0+dfsg - - - - - 30 changed files: - README.md - build.xml - + doc/Census-seq_Computational_Protcools.pdf - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecords.java - src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java - src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java - src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java - + src/java/org/broadinstitute/dropseqrna/barnyard/RnaSeqMtMetrics.java - src/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscripts.java - src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtils.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapper.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SummarizeUMIBaseQualities.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderMerger.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/tools/DGEMatrix.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/BiasedBarcodeCollectionFactory.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java - + src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java - + src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeqUtils.java - + src/java/org/broadinstitute/dropseqrna/censusseq/CommonSNPsData.java - + src/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysis.java - + src/java/org/broadinstitute/dropseqrna/censusseq/CsiMetrics.java - + src/java/org/broadinstitute/dropseqrna/censusseq/GenotypeDataBitSetListBacked.java - + src/java/org/broadinstitute/dropseqrna/censusseq/GenotypeDataI.java - + src/java/org/broadinstitute/dropseqrna/censusseq/JointIteratorCounter.java - + src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeGradientAdjustment.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/aa4f6adcc3c4f8c1f24bb00743598819897c802e -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/aa4f6adcc3c4f8c1f24bb00743598819897c802e You're receiving this email because of your account on salsa.debian.org.
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