Pierre Gruet pushed to branch master at Debian Med / libsis-jhdf5-java
Commits: 2d0be93b by Pierre Gruet at 2020-09-21T22:31:22+02:00 Activating build-time tests again - - - - - 390b18a6 by Pierre Gruet at 2020-09-21T22:34:07+02:00 Deleting useless rm in override_dh_auto_clean - - - - - 804e2213 by Pierre Gruet at 2020-09-21T23:04:28+02:00 Forwarding patches - - - - - 9 changed files: - debian/changelog - debian/patches/adapting_h5ar_script_to_debian.patch - debian/patches/avoid_using_private_hdf5_header.patch - debian/patches/declaring_final_variables.patch - debian/patches/loading_jni_in_java_file.patch - debian/patches/use_debian_packaged_libs.patch - debian/patches/use_jaxb.patch - debian/patches/using_h5util_definitions.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +libsis-jhdf5-java (19.04.0+dfsg-3) unstable; urgency=medium + + * Activating build-time tests again + * Deleting useless rm in override_dh_auto_clean + * Forwarding patches + + -- Pierre Gruet <[email protected]> Mon, 21 Sep 2020 23:03:34 +0200 + libsis-jhdf5-java (19.04.0+dfsg-2) unstable; urgency=medium [ Pierre Gruet ] ===================================== debian/patches/adapting_h5ar_script_to_debian.patch ===================================== @@ -1,6 +1,7 @@ Description: Adapting bindings to the location of files on a Debian system Author: Pierre Gruet <[email protected]> Last-Update: 2020-05-12 +Forwarded: not-needed --- a/dist/bin/h5ar +++ b/dist/bin/h5ar ===================================== debian/patches/avoid_using_private_hdf5_header.patch ===================================== @@ -1,6 +1,9 @@ Description: avoid using the header H5private.h of hdf5, which is not shipped + We do not mix the sources of hdf5 and sis-jhdf5, which upstream apparently + does. Author: Pierre Gruet <[email protected]> Last-Update: 2020-04-26 +Forwarded: not-needed --- a/source/c/jni/h5jni.h +++ b/source/c/jni/h5jni.h ===================================== debian/patches/declaring_final_variables.patch ===================================== @@ -1,6 +1,7 @@ Description: Adding final qualifier for some variables used by an inner class Author: Pierre Gruet <[email protected]> Last-Update: 2020-05-12 +Forwarded: [email protected] --- a/source/java/ch/systemsx/cisd/hdf5/HDF5BaseWriter.java +++ b/source/java/ch/systemsx/cisd/hdf5/HDF5BaseWriter.java ===================================== debian/patches/loading_jni_in_java_file.patch ===================================== @@ -3,6 +3,7 @@ Description: adding loading of jni part in Java code In two other ones, the library call has to be changed. Author: Pierre Gruet <[email protected]> Last-Update: 2020-05-07 +Forwarded: not-needed --- a/source/java/ch/systemsx/cisd/hdf5/io/HDF5DataSetRandomAccessFile.java +++ b/source/java/ch/systemsx/cisd/hdf5/io/HDF5DataSetRandomAccessFile.java ===================================== debian/patches/use_debian_packaged_libs.patch ===================================== @@ -1,6 +1,7 @@ Author: Andreas Tille <[email protected]> Last-Update: Mon, 13 Aug 2018 14:30:28 +0200 Description: Use Debian packaged jars +Forwarded: not-needed --- a/.classpath +++ b/.classpath ===================================== debian/patches/use_jaxb.patch ===================================== @@ -1,6 +1,7 @@ Author: Emmanuel Bourg <[email protected]> Date: Wed, 19 Sep 2018 23:29:20 +0200 Origin: https://lists.debian.org/debian-java/2018/09/msg00061.html +Forwarded: not-needed Description: It isn't missing, it's hidden by default to prepare its removal in the next Java release. . ===================================== debian/patches/using_h5util_definitions.patch ===================================== @@ -6,6 +6,7 @@ Description: using definitions of source/c/jni/h5util.h uses functions of which prototypes are in this file. Author: Pierre Gruet <[email protected]> Last-Update: 2020-04-26 +Forwarded: [email protected] --- a/source/c/h5lHelperImp.c +++ b/source/c/h5lHelperImp.c ===================================== debian/rules ===================================== @@ -18,12 +18,7 @@ CPPFLAGS += ${jvm_includes} -Ijni override_dh_auto_clean: dh_auto_clean - $(RM) -rf debian/libsis-jhdf5-java/ debian/libsis-jhdf5-jni/ debian/tmp/ debian/.debhelper/ - $(RM) debian/*debhelper* debian/files debian/*.substvars - $(RM) -rf targets/ test-output/ $(RM) source/c/libsis-jhdf5.so - $(RM) -rf debian/_jh* - $(RM) -rf debian/h5ar/ $(RM) sis-jhdf5-h5ar-cli.jar override_dh_auto_build: @@ -71,7 +66,7 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) JNIPATH="`readlink -f source/c`:/usr/lib/jni" \ TZ=Europe/Zurich LC_ALL=C ; \ find $$TESTSOURCEDIR/sourceTest/java -name '*.java' | xargs javac && \ - java -Xmx2048M -Djava.library.path="$$JNIPATH" org.testng.TestNG -verbose 2 sourceTest/java/tests.xml || true # FIXME: todo: 8 test suite failures - should be left for source-only upload + java -Xmx2048M -Djava.library.path="$$JNIPATH" org.testng.TestNG -verbose 2 sourceTest/java/tests.xml # These other tests have 3 failures. I don't think they are expected to pass. #cd sourceTest/java && \ #ln -s test/hdf5lib/h5ex_g_iterate.hdf . && \ View it on GitLab: https://salsa.debian.org/med-team/libsis-jhdf5-java/-/compare/5fe15c8303535a026c4d6c98e797ba2a68af90fb...804e2213da150999f424213b80763cce40a58acf -- View it on GitLab: https://salsa.debian.org/med-team/libsis-jhdf5-java/-/compare/5fe15c8303535a026c4d6c98e797ba2a68af90fb...804e2213da150999f424213b80763cce40a58acf You're receiving this email because of your account on salsa.debian.org.
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