Olivier Sallou pushed to branch master at Debian Med / htsjdk
Commits: 61e92f8d by Olivier Sallou at 2020-09-25T14:06:06+00:00 lintian cleaning - - - - - 11 changed files: - debian/changelog - debian/patches/10-build.xml.patch - debian/patches/100-fix-java11 - debian/patches/13-skip_network_tests - debian/patches/40-fix-java9 - − debian/patches/50-fix-javadoc - debian/patches/60-enable-tests - debian/patches/80-2to3.patch - debian/patches/90-disable-testftp.patch - debian/patches/92-disable-testhttp.patch - debian/patches/disable-network-tests.diff Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +htsjdk (2.23.0+dfsg-3) UNRELEASED; urgency=medium + + * lintian fixes in d/patches + + -- Olivier Sallou <[email protected]> Fri, 25 Sep 2020 14:04:53 +0000 + htsjdk (2.23.0+dfsg-2) unstable; urgency=medium * source-only upload ===================================== debian/patches/10-build.xml.patch ===================================== @@ -1,6 +1,6 @@ Description: Modifies the upstream build system. Origin: vendor -Forwarded: no +Forwarded: not-needed Author: Andreas Tille <[email protected]> Last-Update: Wed, 29 Jun 2016 10:45:03 +0200 ===================================== debian/patches/100-fix-java11 ===================================== @@ -3,7 +3,7 @@ Description: xml.bind has been removed from openjdk 11, add jaxb-api jar file to compilation and classpath Author: Olivier Sallou <[email protected]> Last-Updated: 2018-11-12 -Forwarded: no +Forwarded: not-needed --- a/build.gradle +++ b/build.gradle @@ -22,6 +22,7 @@ ===================================== debian/patches/13-skip_network_tests ===================================== @@ -3,6 +3,7 @@ Subject: disable network tests Description: remove network related tests fixing bug 808593 Last-Updated: 2015-01-06 +Forwarded: not-needed --- a/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java +++ b/src/test/java/htsjdk/samtools/seekablestream/SeekableBufferedStreamTest.java @@ -42,72 +42,6 @@ ===================================== debian/patches/40-fix-java9 ===================================== @@ -1,9 +1,9 @@ Subject: add support for java9 -Description: Java 9 uses modules, code makes use fo some modules, +Description: Java 9 uses modules, code makes use of some modules, need to add them Author: Olivier Sallou <[email protected]> Last-Updated: 17-04-2018 -Forwarded: no +Forwarded: not-needed --- a/build.gradle +++ b/build.gradle @@ -123,6 +123,7 @@ ===================================== debian/patches/50-fix-javadoc deleted ===================================== @@ -1,25 +0,0 @@ -Subject: javadoc exception -Description: some exception is raised by javadoc - looks like an openjdk issue, this patch removes impacted - comments -Author: Olivier Sallou <[email protected]> -Last-Updated: 2018-04-17 -Forwarded: no ---- a/src/main/java/htsjdk/samtools/util/MergingIterator.java -+++ b/src/main/java/htsjdk/samtools/util/MergingIterator.java -@@ -88,7 +88,6 @@ - } - - /** -- * @see java.util.Iterator<T>.hasNext - */ - @Override - public boolean hasNext() { -@@ -96,7 +95,6 @@ - } - - /** -- * @see java.util.Iterator<T>.next - */ - @Override - public T next() { ===================================== debian/patches/60-enable-tests ===================================== @@ -1,7 +1,7 @@ Author: Olivier Sallou <[email protected]> Last-Update: 2018-04-17 Description: Enable tests using testng - +Forwarded: not-needed --- a/build.gradle +++ b/build.gradle @@ -102,6 +102,13 @@ ===================================== debian/patches/80-2to3.patch ===================================== @@ -1,7 +1,7 @@ Author: Andreas Tille <[email protected]> Last-Update: Tue, 17 Apr 2018 15:14:40 +0200 Description: Use 2to3 to convert Python script to Python3 - +Forwarded: no --- a/scripts/explain_sam_flags.py +++ b/scripts/explain_sam_flags.py @@ -1,4 +1,4 @@ ===================================== debian/patches/90-disable-testftp.patch ===================================== @@ -1,7 +1,7 @@ Author: Olivier Sallou <[email protected]> Date: Tue Sep 18 07:28:01 2018 +0000 Description: remove unsupported *tags* and disable ftp tests as require network connection - +Forwarded: not-needed --- a/build.gradle +++ b/build.gradle @@ -115,15 +115,6 @@ ===================================== debian/patches/92-disable-testhttp.patch ===================================== @@ -1,7 +1,7 @@ Author: Andreas Tille <[email protected]> Date: Wed Sep 18 14:28:01 2018 +0200 Description: Skip test requiring http connection - +Forwarded: not-needed --- a/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java +++ b/src/test/java/htsjdk/samtools/util/BlockCompressedInputStreamTest.java @@ -150,30 +150,6 @@ ===================================== debian/patches/disable-network-tests.diff ===================================== @@ -2,7 +2,7 @@ Author: Matthias Klose <[email protected]> Last-Update: Fri, 1 Mar 2019 18:06:32 +0100 Bug-Debian: https://bugs.debian.org/923539 Description: Ignore test that accesses the network during the build - +Forwarded: not-needed --- a/src/test/java/htsjdk/samtools/util/HttpUtilsTest.java +++ /dev/null @@ -1,34 +0,0 @@ View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8 -- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/61e92f8db4a97f951e2f45b56f2707c96d7ff3b8 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
