Pierre Gruet pushed to branch master at Debian Med / gatk_old
Commits: 31a5e4d3 by Pierre Gruet at 2020-09-25T22:48:52+02:00 Removing gradle/ dir with its embedded jar - - - - - e782647d by Pierre Gruet at 2020-09-25T22:50:17+02:00 Depending on debhelper-compat 13 - - - - - d92f0be7 by Pierre Gruet at 2020-09-25T22:51:20+02:00 Bumping Standards version to 4.5.0 (Rules-Requires-Root field added) - - - - - a38d62f7 by Pierre Gruet at 2020-09-25T22:52:02+02:00 Deleting old Maven patches as gradle is now used - - - - - aa7a3a38 by Pierre Gruet at 2020-09-25T23:00:02+02:00 Switching build system to gradle - - - - - 7 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - − debian/patches/only-free-parts.patch - − debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,5 +1,5 @@ -gatk (4.1.2.0+dfsg-1) UNRELEASED; urgency=low +gatk (4.1.8.1+dfsg-1) UNRELEASED; urgency=medium * Initial release (Closes: #<bug>) - -- Andreas Tille <[email protected]> Thu, 26 Mar 2015 13:20:02 +0100 + -- Pierre Gruet <[email protected]> Fri, 25 Sep 2020 22:56:23 +0200 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -12 ===================================== debian/control ===================================== @@ -2,15 +2,16 @@ Source: gatk Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 12~), - javahelper, +Uploaders: Andreas Tille <[email protected]>, + Pierre Gruet <[email protected]> +Build-Depends: debhelper-compat (= 13), default-jdk, - maven-debian-helper -Standards-Version: 4.3.0 + gradle-debian-helper +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/gatk Vcs-Git: https://salsa.debian.org/med-team/gatk.git Homepage: https://www.broadinstitute.org/gatk/ +Rules-Requires-Root: no Package: gatk Architecture: any ===================================== debian/copyright ===================================== @@ -6,6 +6,7 @@ Files-Excluded: *.data .gitignore .gitattributes .dockerignore + gradle Files: * Copyright: 2012-2014 The Broad Institute ===================================== debian/patches/only-free-parts.patch deleted ===================================== @@ -1,39 +0,0 @@ -Author: Andreas Tille <[email protected]> -Last-Update: Thu, 26 Mar 2015 13:20:02 +0100 -Description: When leaving these chunks mh_make fails - so just remove it - ---- a/pom.xml -+++ b/pom.xml -@@ -777,31 +777,7 @@ - </reporting> - - <profiles> -- <!-- Optionally include protected --> -- <profile> -- <id>protected</id> -- <activation> -- <file> -- <exists>${basedir}/protected/pom.xml</exists> -- </file> -- </activation> -- <modules> -- <module>protected</module> -- </modules> -- </profile> -- -- <!-- Optionally include private --> -- <profile> -- <id>private</id> -- <activation> -- <file> -- <exists>${basedir}/private/pom.xml</exists> -- </file> -- </activation> -- <modules> -- <module>private</module> -- </modules> -- </profile> -+ <!-- Optionally include private ... mh_make stumbles upon this missing directories --> - - <!-- Optionally do not shade/package jars --> - <!-- ===================================== debian/patches/series deleted ===================================== @@ -1 +0,0 @@ -only-free-parts.patch ===================================== debian/rules ===================================== @@ -18,4 +18,4 @@ JAVA_HOME=/usr/lib/jvm/default-java %: - dh $@ --buildsystem=maven --with javahelper + dh $@ View it on GitLab: https://salsa.debian.org/med-team/gatk_old/-/compare/70879254fff34de077503462bb64f72f9dae46fb...aa7a3a3804e4d4e22a1bad5ec83dfbacabf3e663 -- View it on GitLab: https://salsa.debian.org/med-team/gatk_old/-/compare/70879254fff34de077503462bb64f72f9dae46fb...aa7a3a3804e4d4e22a1bad5ec83dfbacabf3e663 You're receiving this email because of your account on salsa.debian.org.
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