Michael R. Crusoe pushed to branch master at Debian Med / picard-tools
Commits: 037e04a9 by Michael R. Crusoe at 2020-10-08T18:22:18+02:00 adjustments to avoid testing on non-amd64 - - - - - cec5373c by Michael R. Crusoe at 2020-10-08T18:22:23+02:00 Mark the remaining patches as not needing forwarding to upstream. - - - - - d03515e4 by Michael R. Crusoe at 2020-10-08T18:42:08+02:00 release 2.23.4+dfsg-3 - - - - - 9 changed files: - debian/changelog - debian/patches/20-shadowjar.patch - debian/patches/40-tests-fix-testng.patch - debian/patches/50-tests-exclude-Barclay.patch - debian/patches/fix_javadoc_ascii.patch - debian/patches/fix_unreadabletests.patch - debian/patches/remove_google_nio.patch - debian/patches/series - debian/tests/control Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +picard-tools (2.23.4+dfsg-3) unstable; urgency=medium + + * Team upload. + * debian/tests/control: adjustments to avoid testing on non-amd64 + Closes: #970502 + * Mark the remaining patches as not needing forwarding to upstream. + + -- Michael R. Crusoe <[email protected]> Thu, 08 Oct 2020 18:41:58 +0200 + picard-tools (2.23.4+dfsg-2) unstable; urgency=medium * Fixed classpath in picard.jar Manifest (s/:/ /g) ===================================== debian/patches/20-shadowjar.patch ===================================== @@ -1,5 +1,6 @@ Description: do not use shadowjar Author: Sascha Steinbiss <[email protected]> +Forwarded: not-needed --- picard-tools.orig/build.gradle +++ picard-tools/build.gradle @@ -126,7 +126,7 @@ ===================================== debian/patches/40-tests-fix-testng.patch ===================================== @@ -5,6 +5,7 @@ Description: Fix testng version and disable some tests. long and Integers. This leads to test issues when provider [0,9] values and methods expects a long (testng sends an Integer). This patch disable some tests around this +Forwarded: not-needed --- picard-tools.orig/build.gradle +++ picard-tools/build.gradle @@ -69,9 +69,6 @@ ===================================== debian/patches/50-tests-exclude-Barclay.patch ===================================== @@ -6,7 +6,7 @@ Description: There used to be a tes suite error with BarclayParser deleted. . FIXME: Try next release without this patch - +Forwarded: not-needed --- a/src/test/java/picard/cmdline/PicardCommandLineTest.java +++ b/src/test/java/picard/cmdline/PicardCommandLineTest.java @@ -43,23 +43,6 @@ ===================================== debian/patches/fix_javadoc_ascii.patch ===================================== @@ -1,7 +1,7 @@ Author: Olivier Sallou Last-Update: 2018-04-23 14:51:06 +0000 Description: Fix some issues with JavaDoc - +Forwarded: not-needed --- a/src/main/java/picard/illumina/IlluminaBasecallsToFastq.java +++ b/src/main/java/picard/illumina/IlluminaBasecallsToFastq.java @@ -23,7 +23,6 @@ ===================================== debian/patches/fix_unreadabletests.patch ===================================== @@ -4,7 +4,7 @@ Description: some tests try to check that a non readable file or directory and unreadable is not effective. This patch removes related tests Last-Updated: 2019-01-18 Author: Olivier Sallou <[email protected]> -Forwarded: no +Forwarded: not-needed --- a/src/test/java/picard/illumina/ExtractIlluminaBarcodesTest.java +++ b/src/test/java/picard/illumina/ExtractIlluminaBarcodesTest.java @@ -159,33 +159,6 @@ ===================================== debian/patches/remove_google_nio.patch ===================================== @@ -1,7 +1,7 @@ Author: Olivier Sallou Last-Update: 2018-04-23 14:51:06 Description: Remove Google cloud storage - +Forwarded: not-needed --- picard-tools.orig/src/main/java/picard/nio/GoogleStorageUtils.java +++ picard-tools/src/main/java/picard/nio/GoogleStorageUtils.java @@ -25,14 +25,6 @@ ===================================== debian/patches/series ===================================== @@ -6,3 +6,4 @@ remove_google_nio.patch fix_unreadabletests.patch 60-tests-exclude-network.patch +#fix_javadoc_ascii.patch ===================================== debian/tests/control ===================================== @@ -1,3 +1,3 @@ Tests: run-unit-test -Depends: @ -Restrictions: allow-stderr +Depends: picard-tools +Restrictions: allow-stderr, skip-not-installable View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/5e179c294f3840f5f9c2edc282332af3f4aecfbe...d03515e4af88a91efb4c911bc65cef479b3d3814 -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/5e179c294f3840f5f9c2edc282332af3f4aecfbe...d03515e4af88a91efb4c911bc65cef479b3d3814 You're receiving this email because of your account on salsa.debian.org.
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