Nilesh Patra pushed to branch master at Debian Med / neobio
Commits: 0378d4a0 by Nilesh Patra at 2020-11-16T19:47:05+05:30 Add autopkgtests - - - - - 490f3e42 by Nilesh Patra at 2020-11-16T19:47:21+05:30 routine-update: Standards-Version: 4.5.0 - - - - - 23671933 by Nilesh Patra at 2020-11-16T19:47:21+05:30 routine-update: debhelper-compat 13 - - - - - bde28dae by Nilesh Patra at 2020-11-16T19:47:28+05:30 routine-update: Remove trailing whitespace in debian/copyright - - - - - e6b2f78a by Nilesh Patra at 2020-11-16T19:47:28+05:30 routine-update: Remove trailing whitespace in debian/rules - - - - - 43cdf9d7 by Nilesh Patra at 2020-11-16T19:47:28+05:30 routine-update: Add salsa-ci file - - - - - cadd5c7b by Nilesh Patra at 2020-11-16T19:47:28+05:30 routine-update: Rules-Requires-Root: no - - - - - 5ef95e1e by Nilesh Patra at 2020-11-16T19:50:32+05:30 Upload to unstable - - - - - 8 changed files: - debian/changelog - − debian/compat - debian/control - debian/copyright - debian/rules - + debian/salsa-ci.yml - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,23 @@ +neobio (0.0.20030929-5) unstable; urgency=medium + + * Team Upload. + [ Hervé Ménager ] + * fix bio.tools ref + + [ Steffen Moeller ] + * d/u/metadata: yamllint + + [ Nilesh Patra ] + * Add autopkgtests + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Remove trailing whitespace in debian/copyright (routine-update) + * Remove trailing whitespace in debian/rules (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + + -- Nilesh Patra <[email protected]> Mon, 16 Nov 2020 19:47:39 +0530 + neobio (0.0.20030929-4) unstable; urgency=medium * debhelper 11 ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -4,13 +4,14 @@ Uploaders: Christoph Gille <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~), +Build-Depends: debhelper-compat (= 13), default-jdk, javahelper -Standards-Version: 4.2.1 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/neobio Vcs-Git: https://salsa.debian.org/med-team/neobio.git Homepage: http://neobio.sourceforge.net/ +Rules-Requires-Root: no Package: neobio Architecture: all ===================================== debian/copyright ===================================== @@ -39,6 +39,6 @@ License: GPL-3 . You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. -Comment: On Debian systems, the complete text of the GNU General Public License +Comment: On Debian systems, the complete text of the GNU General Public License version 3 can be found in ‘/usr/share/common-licenses/GPL-3’ ===================================== debian/rules ===================================== @@ -6,7 +6,7 @@ include /usr/share/dpkg/default.mk -%: +%: dh $@ --with javahelper ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, default-jdk +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,22 @@ +#!/bin/bash +set -e + +pkg="neobio" + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/lib/${pkg}/data/* $AUTOPKGTEST_TMP + +cd $AUTOPKGTEST_TMP +gunzip -r * + +echo "Test 1" +java -cp /usr/share/java/neobio.jar neobio.textui.NeoBio NW dna01a.txt dna02a.txt S 1 -1 -1 +echo "PASS" + +echo "Test 2" +java -cp /usr/share/java/neobio.jar neobio.textui.NeoBio CLZG dna01a.txt dna02a.txt M blosum62.txt +echo "PASS" View it on GitLab: https://salsa.debian.org/med-team/neobio/-/compare/3c5bf440aa4ebbada2f788db8cbfebf1a23d62e1...5ef95e1eec15d315865c93777ef1d814106344de -- View it on GitLab: https://salsa.debian.org/med-team/neobio/-/compare/3c5bf440aa4ebbada2f788db8cbfebf1a23d62e1...5ef95e1eec15d315865c93777ef1d814106344de You're receiving this email because of your account on salsa.debian.org.
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