Étienne Mollier pushed to branch master at Debian Med / libmaus2
Commits: be6f8364 by Étienne Mollier at 2020-11-18T15:30:41+01:00 add spelling-error-in-header.patch - - - - - 3 changed files: - debian/changelog - + debian/patches/series - + debian/patches/spelling-error-in-header.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +libmaus2 (2.0.766+dfsg-2) UNRELEASED; urgency=medium + + * Add spelling-error-in-header.patch to fix spelling-error-in-binary affecting + biobambam2. + + -- Étienne Mollier <[email protected]> Wed, 18 Nov 2020 13:52:56 +0100 + libmaus2 (2.0.766+dfsg-1) unstable; urgency=medium * New upstream version ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +spelling-error-in-header.patch ===================================== debian/patches/spelling-error-in-header.patch ===================================== @@ -0,0 +1,51 @@ +Description: fix spelling error in header files + This is causing lintian reports spelling-error-in-binary in biobambam2. +Author: Étienne Mollier <[email protected]> +Forwarded: no +Last-Update: 2020-11-18 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- libmaus2.orig/src/libmaus2/bambam/BamHeaderLowMem.hpp ++++ libmaus2/src/libmaus2/bambam/BamHeaderLowMem.hpp +@@ -699,7 +699,7 @@ + if ( ! isi ) + { + ::libmaus2::exception::LibMausException se; +- se.getStream() << "BamHeaderLowMem: defect @PG line with non-existant parent " << std::string(text+parstart,text+parend) << ":\n" << PLA->getLine(text,lineid) << std::endl; ++ se.getStream() << "BamHeaderLowMem: defect @PG line with non-existent parent " << std::string(text+parstart,text+parend) << ":\n" << PLA->getLine(text,lineid) << std::endl; + se.finish(); + throw se; + } +--- libmaus2.orig/src/libmaus2/bambam/HeaderLine.hpp ++++ libmaus2/src/libmaus2/bambam/HeaderLine.hpp +@@ -129,7 +129,7 @@ + if ( ! hasKey(key) ) + { + ::libmaus2::exception::LibMausException se; +- se.getStream() << "bambam::HeaderLine::getValue called for non existant key: " << key << " for line of type " << type << std::endl; ++ se.getStream() << "bambam::HeaderLine::getValue called for non existent key: " << key << " for line of type " << type << std::endl; + se.finish(); + throw se; + } +--- libmaus2.orig/src/libmaus2/fastx/FastABgzfIndex.hpp ++++ libmaus2/src/libmaus2/fastx/FastABgzfIndex.hpp +@@ -98,7 +98,7 @@ + if ( i < 0 ) + { + libmaus2::exception::LibMausException ex; +- ex.getStream() << "::libmaus2::fastx::FastABgzfIndexEntry::operator[] called for non existant id" << std::endl; ++ ex.getStream() << "::libmaus2::fastx::FastABgzfIndexEntry::operator[] called for non existent id" << std::endl; + ex.finish(); + throw ex; + } +--- libmaus2.orig/src/test/testAIO.cpp ++++ libmaus2/src/test/testAIO.cpp +@@ -255,7 +255,7 @@ + + void testPosixFdOverwrite() + { +- std::string const fn = "nonexistant.test.file"; ++ std::string const fn = "nonexistent.test.file"; + std::string const text1 = "Hello world."; + std::string const text2 = "new text"; + View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/be6f8364c812e75c44c9134e2cddf2d92690344f -- View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/be6f8364c812e75c44c9134e2cddf2d92690344f You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
