Nilesh Patra pushed to branch upstream at Debian Med / parsnp
Commits:
2a23b71a by Nilesh Patra at 2020-12-01T18:13:51+05:30
New upstream version 1.5.4+dfsg
- - - - -
1 changed file:
- parsnp
Changes:
=====================================
parsnp
=====================================
@@ -14,7 +14,7 @@ import signal
import inspect
from multiprocessing import *
-__version__ = "1.5.3"
+__version__ = "1.5.4"
reroot_tree = True #use --midpoint-reroot
try:
@@ -1317,6 +1317,7 @@ Please verify recruited genomes are all strain of
interest""")
bedfile_dict[srpos] =
"1\t%s\t%s\tREC\t%.3f\t+\n"%(srpos,pos+50+block_spos,eval)
else:
chrnum = 1
+ chr_spos = list(ref_seqs.keys())
for cs in ref_seqs:
if block_spos < chr_spos:
chrnum = ref_seqs[cs]
View it on GitLab:
https://salsa.debian.org/med-team/parsnp/-/commit/2a23b71a8e230b0cff0e487b80e6c908b16c11da
--
View it on GitLab:
https://salsa.debian.org/med-team/parsnp/-/commit/2a23b71a8e230b0cff0e487b80e6c908b16c11da
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