Steffen Möller pushed to branch master at Debian Med / bcbio
Commits:
a2aa99d1 by Steffen Moeller at 2020-12-07T18:40:02+01:00
Extended paths available for testing
- - - - -
097a6fd6 by Steffen Moeller at 2020-12-07T18:40:30+01:00
Added build dependencies
- - - - -
2 changed files:
- debian/control
- debian/patches/pythonpaths.patch
Changes:
=====================================
debian/control
=====================================
@@ -57,7 +57,9 @@ Build-Depends: debhelper-compat (= 13),
r-other-wasabi <!nocheck>,
r-bioc-htsfilter <!nocheck>,
r-bioc-degreport <!nocheck>,
+ r-bioc-purecn <!nocheck>,
r-cran-tidyverse <!nocheck>,
+ r-bioc-titancna <!nocheck>,
r-bioc-tximport <!nocheck>,
r-other-wasabi <!nocheck>,
salmon <!nocheck>,
@@ -112,6 +114,8 @@ Recommends:
python3-statsmodels,
python3-tabulate,
r-other-wasabi,
+ r-bioc-purecn,
+ r-bioc-titancna,
seqan-apps,
vcfanno,
vt
=====================================
debian/patches/pythonpaths.patch
=====================================
@@ -67,7 +67,7 @@ Index: bcbio/tests/run_tests.sh
unset PYTHONHOME
-unset PYTHONPATH
-+export PATH=$(pwd)/scripts:$PATH
++export PATH=$(pwd)/scripts:/usr/lib/debian-med/bin:$PATH
+export PYTHONPATH=$(pwd)
export PYTHONNOUSERSITE=1
# Ensure version.py exists in raw cloned bcbio directory
View it on GitLab:
https://salsa.debian.org/med-team/bcbio/-/compare/d94cceaa36d209359b470b29278d2fac746f2901...097a6fd6f3b31b588aa034a942d480a124352aaa
--
View it on GitLab:
https://salsa.debian.org/med-team/bcbio/-/compare/d94cceaa36d209359b470b29278d2fac746f2901...097a6fd6f3b31b588aa034a942d480a124352aaa
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