Nilesh Patra pushed to branch master at Debian Med / kleborate
Commits: 36abc8ee by Nilesh Patra at 2020-12-09T01:14:43+05:30 routine-update: New upstream version - - - - - 03f5f01d by Nilesh Patra at 2020-12-09T01:14:44+05:30 New upstream version 2.0.1 - - - - - 6617ed1c by Nilesh Patra at 2020-12-09T01:16:23+05:30 Update upstream source from tag 'upstream/2.0.1' Update to upstream version '2.0.1' with Debian dir 37d26d71b41e2d9304eb9dec6a8afb8449b69204 - - - - - 4dd190eb by Nilesh Patra at 2020-12-09T01:16:24+05:30 routine-update: Standards-Version: 4.5.1 - - - - - 537f05ba by Nilesh Patra at 2020-12-09T01:16:32+05:30 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - kleborate/data/CARD_AMR_clustered.csv - kleborate/kaptive.py - kleborate/version.py Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +kleborate (2.0.1-1) unstable; urgency=medium + + * Team upload. + * New upstream version + * Standards-Version: 4.5.1 (routine-update) + + -- Nilesh Patra <[email protected]> Wed, 09 Dec 2020 01:16:32 +0530 + kleborate (2.0.0-1) unstable; urgency=medium * New upstream version ===================================== debian/control ===================================== @@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13), ncbi-blast+ <!nocheck>, mash <!nocheck>, kaptive <!nocheck> -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/kleborate Vcs-Git: https://salsa.debian.org/med-team/kleborate.git Homepage: https://github.com/katholt/Kleborate ===================================== kleborate/data/CARD_AMR_clustered.csv ===================================== @@ -1568,8 +1568,7 @@ clusterid,queryID,class,gene,allele,seqID,accession,positions,size,cluster_conta 135,SHV-107,Bla,SHV-OKP-LEN,SHV-107,1568,ARO_3001156,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_inhR 135,SHV-26,Bla,SHV-OKP-LEN,SHV-26,1569,ARO_3001084,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_chr 135,SHV-49,Bla,SHV-OKP-LEN,SHV-49,1570,ARO_3001106,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_inhR -135,SHV-56.v1,Bla,SHV-OKP-LEN,SHV-56.v1,1571,ARG_AY352599,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_ESBL -135,SHV-56.v2,Bla,SHV-OKP-LEN,SHV-56.v2,1572,ARO_3001112,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_inhR +135,SHV-56,Bla,SHV-OKP-LEN,SHV-56,1572,ARO_3001112,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_inhR 135,SHV-72,Bla,SHV-OKP-LEN,SHV-72,1573,ARO_3001126,-,-,no,no,inhibitor-resistant class A broad-spectrum beta-lactamase,Bla_inhR 135,SHV-110,Bla,SHV-OKP-LEN,SHV-110,1574,ARO_3001159,-,-,no,no,class A extended-spectrum beta-lactamase,Bla_chr 135,SHV-145,Bla,SHV-OKP-LEN,SHV-145,1575,ARO_3001185,-,-,no,no,class A extended-spectrum beta-lactamase,Bla_chr ===================================== kleborate/kaptive.py ===================================== @@ -70,7 +70,7 @@ def run_kaptive(kaptive_py, kaptive_db, contigs, output_file, one_thread): kaptive_prefix = tmp_dir + '/kaptive' kaptive_table = kaptive_prefix + '_table.txt' - p = subprocess.Popen('python3 ' + kaptive_py + + p = subprocess.Popen(sys.executable + ' ' + kaptive_py + ' -a ' + contigs + ' -k ' + kaptive_db + ' -o ' + kaptive_prefix + ===================================== kleborate/version.py ===================================== @@ -16,4 +16,4 @@ not, see <http://www.gnu.org/licenses/>. """ -__version__ = '2.0.0' +__version__ = '2.0.1' View it on GitLab: https://salsa.debian.org/med-team/kleborate/-/compare/68dba321c99d20ecacbaa626d7ca7395adf87b57...537f05ba21ea87302724241a4b66e59dc32536fc -- View it on GitLab: https://salsa.debian.org/med-team/kleborate/-/compare/68dba321c99d20ecacbaa626d7ca7395adf87b57...537f05ba21ea87302724241a4b66e59dc32536fc You're receiving this email because of your account on salsa.debian.org.
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