Steffen Möller pushed to branch master at Debian Med / bcbio
Commits: a48982aa by Steffen Moeller at 2020-12-13T15:24:43+01:00 TL;DR for d/TODO - - - - - 1 changed file: - debian/TODO Changes: ===================================== debian/TODO ===================================== @@ -1,6 +1,17 @@ TODO for bcbio with Debian ========================== +TL;DR +----- + +We yet fail to run bcbio workflows successfully. The package builds but +tests fail. You get pretty close if installing + * GATK (many Java dependencies not packaged) + * qualimap (sources of Java dependencies no longer available) +manually. However, for the immediate future we suggest to install +bcbio via conda - and cordially invite to help us in bringing bcbio +to Debian. + IF YOU ARE READING THIS AND FEEL LIKE HELPING OUT - PLEASE CONTACT US --------------------------------------------------------------------- View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/a48982aa7bca71129decc931487c09ef30496119 -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/a48982aa7bca71129decc931487c09ef30496119 You're receiving this email because of your account on salsa.debian.org.
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