Michael R. Crusoe pushed to branch master at Debian Med / khmer
Commits: 647094e8 by Michael R. Crusoe at 2021-01-04T14:15:25+01:00 Fix autopkgtests for newer pytest: s/pyarg/pyargs/ - - - - - 59838ef4 by Michael R. Crusoe at 2021-01-04T14:18:00+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 39ad852d by Michael R. Crusoe at 2021-01-04T14:18:01+01:00 routine-update: debhelper-compat 13 - - - - - 7f0d97ab by Michael R. Crusoe at 2021-01-04T14:18:11+01:00 Update renamed lintian tag names in lintian overrides. Changes-By: lintian-brush Fixes: lintian: renamed-tag See-also: https://lintian.debian.org/tags/renamed-tag.html - - - - - ef789e06 by Michael R. Crusoe at 2021-01-04T14:18:11+01:00 Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. Changes-By: lintian-brush Fixes: lintian: uses-deprecated-adttmp See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html - - - - - 13591503 by Michael R. Crusoe at 2021-01-04T14:18:12+01:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - debian/khmer.lintian-overrides - debian/tests/run-unit-test - debian/tests/test-liboxli-dev Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +khmer (2.1.2+dfsg-8) unstable; urgency=medium + + * Fix autopkgtests for newer pytest: s/pyarg/pyargs/ + * Standards-Version: 4.5.1 (routine-update) + * debhelper-compat 13 (routine-update) + * Update renamed lintian tag names in lintian overrides. + * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. + + -- Michael R. Crusoe <[email protected]> Mon, 04 Jan 2021 14:18:12 +0100 + khmer (2.1.2+dfsg-7) unstable; urgency=medium * Simplify autopkgtest. Closes: #955566 ===================================== debian/control ===================================== @@ -4,7 +4,7 @@ Uploaders: Michael R. Crusoe <[email protected]>, Kevin Murray <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, python3-guzzle-sphinx-theme, @@ -22,7 +22,7 @@ Build-Depends: debhelper-compat (= 12), libbz2-dev, asciidoctor, rdfind -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/khmer Vcs-Git: https://salsa.debian.org/med-team/khmer.git Homepage: https://khmer.readthedocs.org ===================================== debian/khmer.lintian-overrides ===================================== @@ -1,12 +1,12 @@ # The test data are provided in different compression methods intentionally to test different compression methods # Since they are small anyway there is no reason to work around this -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2 -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2 -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2 -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2 -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz -khmer: duplicated-compressed-file usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2 +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2 +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2 +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2 +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2 +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz +khmer: compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2 ===================================== debian/tests/run-unit-test ===================================== @@ -5,5 +5,5 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) fi cd "$AUTOPKGTEST_TMP" -PATH=/usr/lib/khmer/bin/:$PATH python3 -m pytest --pyarg khmer \ +PATH=/usr/lib/khmer/bin/:$PATH python3 -m pytest --pyargs khmer \ -m 'not known_failing and not huge and not noroot' -q ===================================== debian/tests/test-liboxli-dev ===================================== @@ -1,7 +1,7 @@ #!/bin/sh -ex pkg=khmer -if [ "$ADTTMP" = "" ] ; then +if [ "$AUTOPKGTEST_TMP" = "" ] ; then AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) fi cd "$AUTOPKGTEST_TMP" View it on GitLab: https://salsa.debian.org/med-team/khmer/-/compare/ed4b04f892fb1e19f275055fe523a304387cb7cb...1359150389fbab0ed6e9a0f554c638125fb91940 -- View it on GitLab: https://salsa.debian.org/med-team/khmer/-/compare/ed4b04f892fb1e19f275055fe523a304387cb7cb...1359150389fbab0ed6e9a0f554c638125fb91940 You're receiving this email because of your account on salsa.debian.org.
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