Michael R. Crusoe pushed to branch master at Debian Med / picard-tools
Commits: 50f29de7 by Michael R. Crusoe at 2021-01-07T13:41:40+01:00 routine-update: New upstream version - - - - - a51591b3 by Michael R. Crusoe at 2021-01-07T13:41:43+01:00 New upstream version 2.24.0+dfsg - - - - - 97da6645 by Michael R. Crusoe at 2021-01-07T13:42:17+01:00 Update upstream source from tag 'upstream/2.24.0+dfsg' Update to upstream version '2.24.0+dfsg' with Debian dir da8fff9effd15134064ac13e5134774472066705 - - - - - af65fbfa by Michael R. Crusoe at 2021-01-07T13:42:17+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 0096e3a0 by Michael R. Crusoe at 2021-01-07T13:43:45+01:00 refresh patches. - - - - - 940f6032 by Michael R. Crusoe at 2021-01-07T13:43:53+01:00 routine-update: Ready to upload to unstable - - - - - 15cff312 by Michael R. Crusoe at 2021-01-07T13:59:56+01:00 TODO: test failures - - - - - 30 changed files: - debian/changelog - debian/control - debian/patches/30-tests-fix-dataprovider.patch - debian/patches/40-tests-fix-testng.patch - src/main/java/picard/analysis/AlignmentSummaryMetrics.java - src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java - src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java - src/main/java/picard/analysis/CollectBaseDistributionByCycle.java - src/main/java/picard/analysis/CollectGcBiasMetrics.java - src/main/java/picard/analysis/CollectInsertSizeMetrics.java - src/main/java/picard/analysis/CollectMultipleMetrics.java - src/main/java/picard/analysis/CollectRnaSeqMetrics.java - src/main/java/picard/analysis/CollectRrbsMetrics.java - src/main/java/picard/analysis/CollectWgsMetrics.java - src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java - src/main/java/picard/analysis/MeanQualityByCycle.java - src/main/java/picard/analysis/QualityScoreDistribution.java - src/main/java/picard/analysis/directed/PanelMetricsBase.java - src/main/java/picard/analysis/directed/TargetMetricsCollector.java - src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java - src/main/java/picard/arrays/GtcToVcf.java - src/main/java/picard/cmdline/CommandLineProgram.java - − src/main/java/picard/illumina/parser/ClusterIntensityFileReader.java - − src/main/java/picard/illumina/parser/FourChannelIntensityData.java - src/main/java/picard/illumina/parser/IlluminaData.java - src/main/java/picard/illumina/parser/ReadData.java - src/main/java/picard/sam/BuildBamIndex.java - src/main/java/picard/sam/SamErrorMetric/CollectSamErrorMetrics.java - src/main/java/picard/sam/SamErrorMetric/ReadBaseStratification.java - src/main/java/picard/sam/ValidateSamFile.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/fb26f35d620951878468e3f8ae811d1985840fbf...15cff3129061670ba13b4f46baea41df1a5cd13e -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/fb26f35d620951878468e3f8ae811d1985840fbf...15cff3129061670ba13b4f46baea41df1a5cd13e You're receiving this email because of your account on salsa.debian.org.
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