Nilesh Patra pushed to branch master at Debian Med / cyvcf2
Commits: de5a4eed by Nilesh Patra at 2021-01-26T16:12:38+05:30 Pull Upstream PR to fix ppc64el build failures (Closes:#956675) - - - - - 461002ec by Nilesh Patra at 2021-01-26T16:13:28+05:30 Update changelog - - - - - 3 changed files: - debian/changelog - + debian/patches/188.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +cyvcf2 (0.30.4-2) unstable; urgency=medium + + * Pull Upstream PR to fix ppc64el build + (Closes:#956675) + + -- Nilesh Patra <[email protected]> Tue, 26 Jan 2021 16:12:46 +0530 + cyvcf2 (0.30.4-1) unstable; urgency=medium * Team upload. ===================================== debian/patches/188.patch ===================================== @@ -0,0 +1,34 @@ +From de01c8521677dacb018f2982518a948bf15571d1 Mon Sep 17 00:00:00 2001 +From: Nils Homer <[email protected]> +Date: Wed, 20 Jan 2021 23:28:43 -0800 +Subject: [PATCH] Fix https://github.com/brentp/cyvcf2/issues/182 + +--- + cyvcf2/tests/test_reader.py | 9 +++++++-- + 1 file changed, 7 insertions(+), 2 deletions(-) + +--- a/cyvcf2/tests/test_reader.py ++++ b/cyvcf2/tests/test_reader.py +@@ -333,7 +333,9 @@ + w.write_record(rec) + w.close() + +- v = next(VCF(f)) ++ fh = VCF(f) ++ v = next(fh) ++ fh.close() + assert v.INFO["myflag"] is True, dict(v.INFO) + + f = tempfile.mktemp(suffix=".vcf") +@@ -341,7 +343,10 @@ + w = Writer(f, vcf) + rec.INFO["myflag"] = False + w.write_record(rec) +- v = next(VCF(f)) ++ w.close() ++ fh = VCF(f) ++ v = next(fh) ++ fh.close() + assert_raises(KeyError, v.INFO.__getitem__, "myflag") + + ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ add_htslib_link_dependency.patch #spelling +188.patch View it on GitLab: https://salsa.debian.org/med-team/cyvcf2/-/compare/2dc9352a689ffcca8d46d989ed072b117cea266b...461002ec20796a52081bd5a4e3aa717e4dbf0d8a -- View it on GitLab: https://salsa.debian.org/med-team/cyvcf2/-/compare/2dc9352a689ffcca8d46d989ed072b117cea266b...461002ec20796a52081bd5a4e3aa717e4dbf0d8a You're receiving this email because of your account on salsa.debian.org.
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