Étienne Mollier pushed to branch master at Debian Med / q2-feature-classifier
Commits: f0611b3a by Étienne Mollier at 2021-01-27T22:37:48+01:00 more robust vsearch.patch options removal - - - - - 1 changed file: - debian/patches/vsearch.patch Changes: ===================================== debian/patches/vsearch.patch ===================================== @@ -7,19 +7,15 @@ Last-Update: 2021-01-27 This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- q2-feature-classifier.orig/q2_feature_classifier/_vsearch.py +++ q2-feature-classifier/q2_feature_classifier/_vsearch.py -@@ -50,6 +50,15 @@ +@@ -50,6 +50,11 @@ '--threads', str(threads)] if search_exact: cmd[1] = '--search_exact' + # These options are not compatible with a --search_exact command. -+ cmd.remove('--id') -+ cmd.remove(str(perc_identity)) -+ cmd.remove('--maxaccepts') -+ cmd.remove(str(maxaccepts)) -+ cmd.remove('--maxrejects') -+ cmd.remove(str(maxrejects)) -+ cmd.remove('--query_cov') -+ cmd.remove(str(query_cov)) ++ for pop_arg in ['--id', '--maxaccepts', '--maxrejects', '--query_cov']: ++ pop_idx = cmd.index(pop_arg) ++ cmd.pop(pop_idx) ++ cmd.pop(pop_idx) if top_hits_only: cmd.append('--top_hits_only') if output_no_hits: View it on GitLab: https://salsa.debian.org/med-team/q2-feature-classifier/-/commit/f0611b3a6f7bdcacf0cfac2932fdb491b463a2ed -- View it on GitLab: https://salsa.debian.org/med-team/q2-feature-classifier/-/commit/f0611b3a6f7bdcacf0cfac2932fdb491b463a2ed You're receiving this email because of your account on salsa.debian.org.
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