Shruti Sridhar pushed to branch master at Debian Med / mipe
Commits: c1ab4c69 by Shruti Sridhar at 2021-02-21T23:18:41+05:30 Add autopkgtests - - - - - 58528af8 by Shruti Sridhar at 2021-02-21T23:19:56+05:30 Add data for tests - - - - - 774d9e02 by Shruti Sridhar at 2021-02-21T23:20:13+05:30 Add example for tests - - - - - 60af1bd8 by Shruti Sridhar at 2021-02-21T23:26:48+05:30 Add docs - - - - - 850e21a9 by Shruti Sridhar at 2021-02-21T23:27:48+05:30 Add source for test data - - - - - de974e76 by Shruti Sridhar at 2021-02-21T23:47:57+05:30 Update changelog - - - - - 7 changed files: - + debian/README.test - debian/changelog - debian/docs - + debian/examples - + debian/tests/control - + debian/tests/data/template.mipe - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,14 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. + +Notes on the files used for testing +──────────────────────────────────────── +Files: debian/tests/data/* +Source: http://mipe.sourceforge.net/ + ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +mipe (1.1-8ubuntu1) UNRELEASED; urgency=medium + + * Add autopkgtests + * Add data for tests + * Add example for tests + * Add docs + * Add source for test data + + -- Shruti Sridhar <[email protected]> Sun, 21 Feb 2021 23:47:24 +0530 + mipe (1.1-8) unstable; urgency=medium * Standards-Version: 4.5.1 (routine-update) ===================================== debian/docs ===================================== @@ -1 +1,3 @@ README +debian/README* +debian/tests/run-unit-test \ No newline at end of file ===================================== debian/examples ===================================== @@ -0,0 +1 @@ +debian/tests/data/* \ No newline at end of file ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/data/template.mipe ===================================== @@ -0,0 +1,35 @@ +<?xml version="1.0"?> +<mipe xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xsi:noNamespaceSchemaLocation="http://mipe.sourceforge.net/mipe.xsd";> + <version>1.0</version> + <pcr id="PCR1"> + <id>PCR1</id> + <modified>20040426</modified> + <modified>20040428</modified> + <researcher>Jan Aerts</researcher> + <species>chicken</species> + <design> + <source> + <file>CYP2D6.fas</file> + </source> + <range>125-642</range> + <seq>ACCTACTACTACAAACTACAACAAAATTCACATCAAAACATACACCATACCTACTACTAT...</seq> + <primer1> + <oligo>OL04-242</oligo> + </primer1> + <primer2> + <oligo>OL04-243</oligo> + </primer2> + </design> + <use> + <seq>CACCATCACAGCTCACTATCGCCTGCGGGATCTCTCATTTACACAATTCGAGCTCACATCTATCATATCTAA...</seq> + <revcomp>1</revcomp> + <snp id="SCW0006"> + <id>SCW0006</id> + <pos>45</pos> + <amb>R</amb> + <rank>3</rank> + </snp> + </use> + </pcr> +</mipe> ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,34 @@ +#!/bin/bash +set -e + +pkg=mipe + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + + +mipe0_9to1_0 template.mipe > mipe0_9 +echo "6292e7feaa902e9dab6c8401d780ff06 mipe0_9" >> checksums + +mipe2pcroverview template.mipe > mipepcr +echo "10632740119ff60721a50ded8a375209 mipepcr" >> checksums + +mipe06to07 template.mipe > mipe06 +echo "2878e5c422cd82574df7f75e0182eea4 mipe06" >> checksums + +mipe2snps template.mipe > snp.csv +echo "1d1d78f1a3aba3bb354ef336bb4996e6 snp.csv" >> checksums + +mipe2pcrprimers template.mipe > primers +echo "bc64141b33d3026b6d8c421ba4d779e5 primers" >> checksums + +md5sum --check checksums + + View it on GitLab: https://salsa.debian.org/med-team/mipe/-/compare/ef38e1f4da53cb7a4f597d7141b04449a2c9f947...de974e76099cf525f75b848de3fca5d9b573aeea -- View it on GitLab: https://salsa.debian.org/med-team/mipe/-/compare/ef38e1f4da53cb7a4f597d7141b04449a2c9f947...de974e76099cf525f75b848de3fca5d9b573aeea You're receiving this email because of your account on salsa.debian.org.
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