Michael R. Crusoe pushed to branch debian/experimental at Debian Med / libssw
Commits: abd91b09 by Michael R. Crusoe at 2021-03-05T12:04:53+01:00 routine-update: Standards-Version: 4.5.1 - - - - - ba104fc2 by Michael R. Crusoe at 2021-03-05T12:05:09+01:00 Update watch file format version to 4. Changes-By: lintian-brush Fixes: lintian: older-debian-watch-file-standard See-also: https://lintian.debian.org/tags/older-debian-watch-file-standard.html - - - - - 7338dce4 by Michael R. Crusoe at 2021-03-05T12:24:40+01:00 Bump shared object version to 1 - - - - - 9a2345c5 by Michael R. Crusoe at 2021-03-05T12:36:04+01:00 TODO: decide on keeping both libssw0 and ssw1 in the archive, or writing patches for the other libssw0 users besides vg - - - - - 11 changed files: - debian/changelog - debian/control - debian/libssw-dev.links.in - − debian/libssw0.install.in - + debian/libssw1.install.in - debian/libssw0.symbols → debian/libssw1.symbols - debian/patches/build_all_libs.patch - debian/patches/rename_tool.patch - debian/rules - debian/tests/control - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -2,6 +2,11 @@ libssw (1.2.4~0git20200707~ad452ea-1) UNRELEASED; urgency=medium * Experimental build of upstream snapshot. * Refresh patches + * Standards-Version: 4.5.1 (routine-update) + * Update watch file format version to 4. + * Bump shared object version to 1 + TODO: decide on keeping both libssw0 and ssw1 in the archive, or writing + patches for the other libssw0 users besides vg -- Michael R. Crusoe <[email protected]> Fri, 05 Mar 2021 11:35:53 +0100 ===================================== debian/control ===================================== @@ -12,13 +12,13 @@ Build-Depends: debhelper (>= 12~), zlib1g-dev, libsimde-dev, maven-repo-helper <!nojava> -Standards-Version: 4.5.0 +Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libssw Vcs-Git: https://salsa.debian.org/med-team/libssw.git Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library Rules-Requires-Root: no -Package: libssw0 +Package: libssw1 Architecture: any Multi-Arch: same Section: libs @@ -42,7 +42,7 @@ Architecture: any Multi-Arch: same Section: libdevel Depends: ${misc:Depends}, - libssw0 (= ${binary:Version}) + libssw1 (= ${binary:Version}) Pre-Depends: ${misc:Pre-Depends} Provides: libssw-dev Description: Development headers and static libraries for libssw @@ -69,7 +69,7 @@ Package: ssw-align Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, - libssw0 (= ${binary:Version}) + libssw1 (= ${binary:Version}) Description: Smith-Waterman aligner based on libssw This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. ===================================== debian/libssw-dev.links.in ===================================== @@ -1 +1 @@ -usr/lib/@DEB_HOST_MULTIARCH@/libssw.so.0 usr/lib/@DEB_HOST_MULTIARCH@/libssw.so +usr/lib/@DEB_HOST_MULTIARCH@/libssw.so.1 usr/lib/@DEB_HOST_MULTIARCH@/libssw.so ===================================== debian/libssw0.install.in deleted ===================================== @@ -1 +0,0 @@ -src/libssw.so.0 usr/lib/@DEB_HOST_MULTIARCH@/ ===================================== debian/libssw1.install.in ===================================== @@ -0,0 +1 @@ +src/libssw.so.1 usr/lib/@DEB_HOST_MULTIARCH@/ ===================================== debian/libssw0.symbols → debian/libssw1.symbols ===================================== @@ -1,4 +1,4 @@ -libssw.so.0 libssw0 #MINVER# +libssw.so.1 libssw1 #MINVER# * Build-Depends-Package: libssw-dev _Z16store_previous_maPjS_PiS0_S_@Base 1.1 _Z9add_cigarPjPiS0_jc@Base 1.1 @@ -19,15 +19,15 @@ libssw.so.0 libssw0 #MINVER# _ZN20StripedSmithWaterman7AlignerD1Ev@Base 1.1 _ZN20StripedSmithWaterman7AlignerD2Ev@Base 1.1 _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 - _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base 1.1 - _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE@Base 1.1 + _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4~0git20200707~ad452ea-1 + _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4~0git20200707~ad452ea-1 _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 1.1 _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 1.1 _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 1.1 align_destroy@Base 1.1 + encoded_ops@Base 1.2.4~0git20200707~ad452ea-1 init_destroy@Base 1.1 mark_mismatch@Base 1.1 ssw_align@Base 1.1 ssw_init@Base 1.1 - to_cigar_int@Base 1.1 ===================================== debian/patches/build_all_libs.patch ===================================== @@ -11,7 +11,7 @@ Author: Sascha Steinbiss <[email protected]> LCPPOBJS = ssw_cpp.o PROG = ssw_test -LIB = libssw.so -+SOVERS=.0 ++SOVERS=.1 +LIB = libssw.so$(SOVERS) +STATICLIB = libssw.a EXAMPLE = example_c ===================================== debian/patches/rename_tool.patch ===================================== @@ -10,7 +10,7 @@ Author: Sascha Steinbiss <[email protected]> LCPPOBJS = ssw_cpp.o -PROG = ssw_test +PROG = ssw-align - SOVERS=.0 + SOVERS=.1 LIB = libssw.so$(SOVERS) STATICLIB = libssw.a @@ -30,13 +30,14 @@ ===================================== debian/rules ===================================== @@ -32,10 +32,10 @@ else endif ifneq ($(filter nojava,$(DEB_BUILD_PROFILES)),) -override_dh_auto_install: debian/libssw0.install debian/libssw-dev.install debian/libssw-dev.links +override_dh_auto_install: debian/libssw1.install debian/libssw-dev.install debian/libssw-dev.links dh_auto_install else -override_dh_auto_install: debian/libssw0.install debian/libssw-dev.install debian/libssw-dev.links debian/libssw-java.install debian/libssw-java.links +override_dh_auto_install: debian/libssw1.install debian/libssw-dev.install debian/libssw-dev.links debian/libssw-java.install debian/libssw-java.links mv src/ssw.jar src/ssw-$(DEB_VERSION_UPSTREAM).jar dh_auto_install endif ===================================== debian/tests/control ===================================== @@ -1,5 +1,5 @@ Tests: build-lib -Depends: libssw0, libssw-dev, build-essential, zlib1g-dev +Depends: libssw1, libssw-dev, build-essential, zlib1g-dev Tests: build-lib-java Depends: libssw-java, default-jdk-headless ===================================== debian/watch ===================================== @@ -1,2 +1,2 @@ -version=3 +version=4 https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library/tags .*/v?(\d.*)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz)) View it on GitLab: https://salsa.debian.org/med-team/libssw/-/compare/55257709e368210124a451546e8e8291a2ade5ba...9a2345c5a231bd2920699151bd318f772b34de47 -- View it on GitLab: https://salsa.debian.org/med-team/libssw/-/compare/55257709e368210124a451546e8e8291a2ade5ba...9a2345c5a231bd2920699151bd318f772b34de47 You're receiving this email because of your account on salsa.debian.org.
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