Aaron M. Ucko pushed to branch master at Debian Med / ncbi-entrez-direct
Commits: a9365ddb by Aaron M. Ucko at 2021-03-13T22:24:08-05:00 ncbi-entrez-direct 14.6.20210224+dfsg-3: Deprecate eblast too. * debian/man/eblast.1: Extend deprecation notice to eblast. * debian/man/protein-neighbors.1: Note that eblast is now deprecated too. - - - - - 3 changed files: - debian/changelog - debian/man/eblast.1 - debian/man/protein-neighbors.1 Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +ncbi-entrez-direct (14.6.20210224+dfsg-3) unstable; urgency=medium + + * debian/man/eblast.1: Extend deprecation notice to eblast. + * debian/man/protein-neighbors.1: Note that eblast is now deprecated too. + + -- Aaron M. Ucko <[email protected]> Sat, 13 Mar 2021 22:24:07 -0500 + ncbi-entrez-direct (14.6.20210224+dfsg-2) unstable; urgency=medium * debian/{examples,install,rules}: Relegate obsolescent short-lived ===================================== debian/man/eblast.1 ===================================== @@ -1,9 +1,13 @@ -.TH EBLAST 1 2018-11-18 NCBI "NCBI Entrez Direct User's Manual" +.TH EBLAST 1 2021-03-13 NCBI "NCBI Entrez Direct User's Manual" .SH NAME -eblast \- perform a remote NCBI BLAST protein query +eblast \- perform a remote NCBI BLAST protein query (DEPRECATED) .SH SYNOPSIS \fBeblast\fP (\fBedirect\ \-blast\fP) .SH DESCRIPTION +\fBNote:\fP \fBeblast\fP will not appear +in future releases of NCBI Entrez Direct. +Instead, please use \fBblastp \-remote \-db nr \-outfmt 5 \-query \-\fP. + \fBeblast\fP reads one or more FASTA\-formatted protein sequences from standard input and performs an online search for similar sequences ===================================== debian/man/protein-neighbors.1 ===================================== @@ -1,12 +1,12 @@ -.TH PROTEIN-NEIGHBORS 1 2021-03-07 NCBI "NCBI Entrez Direct User's Manual" +.TH PROTEIN-NEIGHBORS 1 2021-03-21 NCBI "NCBI Entrez Direct User's Manual" .SH NAME protein\-neighbors \- find similar protein accessions, via BLAST (DEPRECATED) .SH SYNOPSIS \fBprotein\-neighbors\fP .SH DESCRIPTION -\fBNote:\fP \fBprotein\-neighbors\fP will not appear -in future releases of NCBI Entrez Direct. -However, the key \fBeblast\fP script remains available for now. +\fBNote:\fP Neither \fBprotein\-neighbors\fP +nor the underlying \fBeblast\fP script +will appear in future releases of NCBI Entrez Direct. \fBprotein\-neighbors\fP reads one or more protein accessions from standard input View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a9365ddb00e7f85577b3eff3dcc970f09b5a4a2f -- View it on GitLab: https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a9365ddb00e7f85577b3eff3dcc970f09b5a4a2f You're receiving this email because of your account on salsa.debian.org.
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