Pierre Gruet pushed to branch master at Debian Med / snpeff
Commits: c925d808 by Pierre Gruet at 2021-02-27T07:20:24+01:00 Replacing the build timestamp using SOURCE_DATE_EPOCH to enhance build reproducibility - - - - - d8c64251 by Pierre Gruet at 2021-03-17T18:12:38+01:00 Refreshing d/copyright and preparing to use a stripped orig tarball - - - - - 71013c7e by Pierre Gruet at 2021-03-17T18:13:41+01:00 Using Fastq* classes from biojava4-live - - - - - d19d6e58 by Pierre Gruet at 2021-03-17T18:19:06+01:00 Adding myself to uploaders, using my debian.org email address - - - - - f2e6979a by Pierre Gruet at 2021-03-17T18:19:47+01:00 Updating changelog - - - - - 56f72acc by Pierre Gruet at 2021-03-17T18:20:35+01:00 New upstream version 4.3t+dfsg1 - - - - - 33f0820d by Pierre Gruet at 2021-03-17T18:22:19+01:00 Update upstream source from tag 'upstream/4.3t+dfsg1' Update to upstream version '4.3t+dfsg1' with Debian dir 62c1ea37e67e89607fb224fe17a37716ff9f2b54 - - - - - 82b96a41 by Pierre Gruet at 2021-03-17T21:06:39+01:00 Adding a lintian override linked to embedded jquery - - - - - 30 changed files: - debian/README.Debian - debian/changelog - debian/control - debian/copyright - + debian/libsnpeff-java-doc.lintian-overrides - debian/manpages/snpEff.1 - debian/patches/adapting_to_htsjdk.patch - debian/patches/adding_scala_in_pom.patch - debian/patches/alter_pom_for_debian_packaging.patch - debian/patches/depending_on_biojava4.patch - debian/patches/fix_tests.patch - debian/patches/replacing_akka_with_java_util_concurrent.patch - debian/patches/series - debian/patches/update_launching_script_and_config_file_for_Debian.patch - + debian/patches/use_fastq_from_biojava4.patch - debian/rules - debian/watch - − examples/1kg.head_chr1.filtered.vcf.gz - − examples/1kg.head_chr1.vcf.gz - − examples/cancer.ann.vcf - − examples/cancer.eff.vcf - − examples/cancer.vcf - − examples/cancer_pedigree.ann.vcf - − examples/cancer_pedigree.vcf - − examples/example_motif.vcf - − examples/examples.sh - − examples/file.vcf - − examples/intervals.bed - − examples/my_annotations.bed - − examples/samples_cancer.txt The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6d58a59db0033e540479082abb5fbcafc3fdaf54...82b96a414a3841e333d77626378f9cd5e6c44221 -- View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/6d58a59db0033e540479082abb5fbcafc3fdaf54...82b96a414a3841e333d77626378f9cd5e6c44221 You're receiving this email because of your account on salsa.debian.org.
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