Pierre Gruet pushed to branch master at Debian Med / artemis
Commits: fbf905bd by Pierre Gruet at 2021-04-26T17:28:35+02:00 Removing useless dependency on jarwrapper - - - - - 896db209 by Pierre Gruet at 2021-04-26T17:30:40+02:00 Using my debian.org email address - - - - - 9 changed files: - debian/changelog - debian/control - debian/copyright - debian/patches/debianize_launcher_scripts.patch - debian/patches/missing_htsjdk_dependency_in_pom.patch - debian/patches/no_install_of_provided_jars.patch - debian/patches/running_build_tests.patch - debian/patches/using_system_jars_in_pom.patch - debian/tests/run-some-unit-tests Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +artemis (18.1.0+dfsg-4) UNRELEASED; urgency=medium + + * Removing useless dependency on jarwrapper + + -- Pierre Gruet <[email protected]> Mon, 26 Apr 2021 17:27:18 +0200 + artemis (18.1.0+dfsg-3) unstable; urgency=medium * Changing homepage in d/control and manpages (Closes: #974680) ===================================== debian/control ===================================== @@ -1,7 +1,7 @@ Source: artemis Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]>, - Pierre Gruet <[email protected]> + Pierre Gruet <[email protected]> Section: science Priority: optional Build-Depends: debhelper-compat (= 13), @@ -59,8 +59,7 @@ Depends: ${misc:Depends}, libpicard-java, jemboss, libcglib-java, - default-jre, - jarwrapper + default-jre Description: genome browser and annotation tool Artemis is a genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the ===================================== debian/copyright ===================================== @@ -49,7 +49,7 @@ License: Apache-2.0 Files: debian/* Copyright: 2015-2016 Afif Elghraoui <[email protected]> - 2020 Pierre Gruet <[email protected]> + 2020 Pierre Gruet <[email protected]> License: GPL-2+ License: Expat ===================================== debian/patches/debianize_launcher_scripts.patch ===================================== @@ -1,7 +1,7 @@ Description: Simplifying the provided launchers Many options or tricks are useless on a Debian system. The paths are also adapted to the Debian install. -Author: Pierre Gruet <[email protected]> +Author: Pierre Gruet <[email protected]> Forwarded: not-needed Last-Update: 2020-09-06 ===================================== debian/patches/missing_htsjdk_dependency_in_pom.patch ===================================== @@ -1,5 +1,5 @@ Description: adding missing dependency on htsjdk in pom -Author: Pierre Gruet <[email protected]> +Author: Pierre Gruet <[email protected]> Forwarded: https://github.com/sanger-pathogens/Artemis/issues/313 Last-Update: 2020-09-04 ===================================== debian/patches/no_install_of_provided_jars.patch ===================================== @@ -1,7 +1,7 @@ Description: avoid installing embedded jars as we removed them Author relies on jars that are embedded in their source archive. Instead, we use the ones that are packaged in Debian. -Author: Pierre Gruet <[email protected]> +Author: Pierre Gruet <[email protected]> Forwarded: not-needed Last-Update: 2020-09-04 ===================================== debian/patches/running_build_tests.patch ===================================== @@ -4,7 +4,7 @@ Description: changes in pom and in test definitions when they cannot be run We also remove the lines allowing to skip tests or to ignore failures. In the definitions of the tests, we add @Ignore for the ones that require a X11 instance to run. -Author: Pierre Gruet <[email protected]> +Author: Pierre Gruet <[email protected]> Forwarded: not-needed Last-Update: 2020-09-05 ===================================== debian/patches/using_system_jars_in_pom.patch ===================================== @@ -1,7 +1,7 @@ Description: specifying paths on Debian system for some dependencies For those dependencies, no maven-repo tree is available, we are therefore giving their path with system scope. -Author: Pierre Gruet <[email protected]> +Author: Pierre Gruet <[email protected]> Forwarded: not-needed Last-Update: 2020-09-04 ===================================== debian/tests/run-some-unit-tests ===================================== @@ -4,7 +4,7 @@ set -e # autopkgtest check: run some unit tests. Some other tests try to launch X11 # or connect through ssh, having the selected one run should be good enough. # (C) 2020 Pierre Gruet. -# Author: Pierre Gruet <[email protected]> +# Author: Pierre Gruet <[email protected]> pkg=artemis View it on GitLab: https://salsa.debian.org/med-team/artemis/-/compare/d96dcd20e930faf20a28c897a7b7f6f19d2abc43...896db2097b9be77e7d77e5e386d883d42b680d76 -- View it on GitLab: https://salsa.debian.org/med-team/artemis/-/compare/d96dcd20e930faf20a28c897a7b7f6f19d2abc43...896db2097b9be77e7d77e5e386d883d42b680d76 You're receiving this email because of your account on salsa.debian.org.
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