Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
10be126f by Andreas Tille at 2021-06-01T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,44 +1,46 @@
-Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
+Last-Update: Tue, 01 Jun 2021 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 173 | {imaging,covid-19}
|
orthanc | 92 | {practice,imaging,covid-19}
|
- gdcm | 49 | {imaging-dev}
|
orthanc-wsi | 49 |
{oncology,his,imaging,covid-19,practice,laboratory} |
+ gdcm | 46 | {imaging-dev}
|
dicom3tools | 29 | {imaging}
|
amide | 27 | {imaging}
|
- htsjdk | 26 | {bio-dev}
|
+ htsjdk | 27 | {bio-dev}
|
+ openslide | 25 | {imaging}
|
dcm2niix | 23 | {imaging}
|
- dicomscope | 23 | {imaging}
|
- openslide | 21 | {imaging}
|
+ dicomscope | 22 | {imaging}
|
gdcm | 18 | {imaging,covid-19}
|
- odin | 18 | {imaging-dev,imaging}
|
minc-tools | 17 | {imaging}
|
- gdcm | 16 | {imaging-dev}
|
+ odin | 17 | {imaging-dev,imaging}
|
+ gdcm | 15 | {imaging-dev}
|
gnumed-server | 15 | {covid-19,practice}
|
- invesalius | 14 | {imaging}
|
+ invesalius | 13 | {imaging}
|
pixelmed | 13 | {imaging}
|
orthanc-webviewer | 12 | {imaging}
|
adun.app | 11 | {bio}
|
dicomnifti | 11 | {imaging}
|
nifticlib | 11 | {imaging}
|
- insighttoolkit4 | 10 | {imaging-dev}
|
plastimatch | 10 | {imaging}
|
+ insighttoolkit4 | 9 | {imaging-dev}
|
+ ngs-sdk | 9 | {bio-dev}
|
mia | 8 | {imaging}
|
ngs-sdk | 8 | {bio-dev}
|
king | 7 | {imaging,typesetting}
|
- ngs-sdk | 7 | {bio-dev}
|
melting | 6 | {cloud,bio}
|
+ ngs-sdk | 6 | {bio-dev}
|
nifti2dicom | 6 | {imaging}
|
+ bamkit | 5 | {bio,covid-19}
|
busco | 5 | {covid-19,bio}
|
dicompyler | 5 | {oncology}
|
nifti2dicom | 5 | {imaging}
|
obitools | 5 | {bio}
|
openslide | 5 | {imaging-dev}
|
salmid | 5 | {bio}
|
- bamkit | 4 | {bio,covid-19}
|
bart-view | 4 | {imaging}
|
+ ea-utils | 4 | {bio}
|
jebl2 | 4 | {bio-dev}
|
lagan | 4 | {bio}
|
libminc | 4 | {imaging-dev}
|
@@ -55,8 +57,8 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
biomaj3-cli | 3 | {cloud}
|
bio-tradis | 3 | {bio-dev,bio}
|
brig | 3 | {bio}
|
- ea-utils | 3 | {bio}
|
jellyfish1 | 3 | {bio}
|
+ libdivsufsort | 3 | {bio-dev}
|
libsbml | 3 | {bio-dev}
|
nifticlib | 3 | {imaging-dev}
|
nipype | 3 | {imaging,imaging-dev}
|
@@ -81,7 +83,6 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
ghmm | 2 | {bio}
|
ipig | 2 | {bio}
|
lamarc | 2 | {bio}
|
- libdivsufsort | 2 | {bio-dev}
|
libncl | 2 | {bio}
|
logol | 2 | {bio}
|
mauve-aligner | 2 | {bio}
|
@@ -113,6 +114,7 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
fsm-lite | 1 | {bio}
|
gatb-core | 1 | {bio}
|
hinge | 1 | {bio}
|
+ htscodecs | 1 | {covid-19,bio-dev}
|
intake | 1 | {bio-dev,bio}
|
jmodeltest | 1 | {bio,bio-phylogeny}
|
libbio-mage-utils-perl | 1 | {bio-dev}
|
@@ -127,9 +129,11 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
perm | 1 | {bio,cloud}
|
piler | 1 | {bio}
|
pique | 1 | {bio}
|
+ plasmidid | 1 | {covid-19,bio}
|
plasmidseeker | 1 | {bio}
|
proalign | 1 | {bio-phylogeny,bio}
|
python-bcbio-gff | 1 | {bio-dev}
|
+ python-wdlparse | 1 | {bio-dev}
|
rambo-k | 1 | {bio}
|
rdp-alignment | 1 | {bio}
|
rdp-classifier | 1 | {bio}
|
@@ -165,7 +169,6 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
fis-gtm | 0 | {his}
|
gatb-core | 0 | {bio-dev}
|
gifticlib | 0 | {imaging-dev}
|
- htscodecs | 0 | {covid-19,bio-dev}
|
kmerresistance | 0 | {bio}
|
libbigwig | 0 | {bio-dev}
|
libbiod | 0 | {bio-dev}
|
@@ -208,12 +211,10 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
pbseqlib | 0 | {bio-dev}
|
pigx-rnaseq | 0 | {bio,covid-19}
|
pilercr | 0 | {bio}
|
- plasmidid | 0 | {covid-19,bio}
|
pplacer | 0 | {bio,covid-19,bio-phylogeny}
|
pscan-chip | 0 | {bio}
|
python-epimodels | 0 | {epi}
|
python-seqcluster | 0 | {covid-19,bio-dev}
|
- python-wdlparse | 0 | {bio-dev}
|
q2-sample-classifier | 0 | {bio,bio-dev}
|
qcumber | 0 | {bio}
|
resfinder-db | 0 | {bio}
|
@@ -237,5 +238,5 @@ Last-Update: Tue, 01 Jun 2021 01:42:03 +0000
mssstest | -1 | {tools}
|
python-seqcluster | -1 | {bio}
|
sight | -1 | {imaging-dev}
|
-(267 rows)
+(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/10be126f0e24d693bbc6bba458bc757ba1b198a5
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/10be126f0e24d693bbc6bba458bc757ba1b198a5
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