On Mon, 17 Dec 2007, Alexandros Stamatakis wrote:
Yes, I am currently working on it, you should get an email regarding this hoepfully soon.
Great.
Yes, that is correct, if I am not seriously mistaken I already added a GPL license to the source code following you inquiry.
Shame on me - I should have checked the source and not only the web page. The source contains a file GPL_RAxML.txt. BTW, if you are working on a new version I have some minor and rather aesthetical request: The source code would look better if you would not set execute permissions on all files and many source files are upper case. This looks - hmmm, how to say - WindowIsh ;-)
There is if you go to this page http://icwww.epfl.ch/~stamatak/AxParafit.html "Manual, Source Code (under GPL), and Binaries"
Here I did the other non working approach for finding the license: I ignored the "(under GPL)" string and just looked at the source archive. ;-) Sorry for the noise, but adding it to the code (in a next release) would be very reasonable.
Thanks for integrating my programs into debian-med.
Well, it's not yet done. We are just doing the first steps into this direction which is listing it as prospective package. For Debian-Med readers I added the following chunk to tasks/bio: -------------------------------------------------------------------- Depends: raxml Homepage: http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm License: GPL Pkg-Description: Randomized Axelerated Maximum Likelihood RAxML is a program for sequential and parallel Maximum Likelihood-based inference of large phylogenetic trees. It has originally been derived from fastDNAml. Depends: axparafit Homepage: http://icwww.epfl.ch/~stamatak/AxParafit.html License: GPL Pkg-Description: optimized statistical analysis of host-parasite coevolution AxParafit is a highly optimized version of Pierre Legendre's Parafit program for statistical analysis of host-parasite coevolution. AxParafit has been parallelized with MPI (Message Passing Interface) for compute clusters and was used to carry out the largest co-evolutionary analysis to date for the paper describing the software. ---------------------------------------------------------------- It will show up in SVN tonight. I'm a little bit unsure about the description of AxPcoords. In how far are AxPcoords and AxParafit are different and how I could find a reasonable short and long description. To Alexandros: We are currently working on a system that replaces our statical todo list in the Debian-Med webspace by a dynamic list but this is not yet finished and thus the text above will not be visible for the next weeks but we hope to get it ready in the beginning of next year. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
