Le Mon, Jul 07, 2008 at 04:09:56PM +0200, Andreas Tille a écrit : > > a colleague of mine stumbled upon Maq at > > http://sourceforge.net/projects/maq/
> /usr/lib/gcc/i486-linux-gnu/4.3.1/libstdc++.a when searching for -lstdc++ > /usr/bin/ld: cannot find -lstdc++ > collect2: ld returned 1 exit status > > on a recent unstable (on testing it is the same error message excep the > gcc version string is 4.2.4 instead of 4.3.1). > Any comments to a completely 64 bit uneducated person? Hi Andreas, you may have more luck on the debian-amd64 mailing list… Anyway, Maq had a nice advertisement in a recent review published in Genome Research, and it is therefore definitely one of the programs we must add to our collection before the end of the year. I just imported a rudimentary packaging in our subversion repository. Unfortunately, the binary building also fails on my machine (powerpc): g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o pair_stat.o pair_stat.ccg++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o indel_soa.o indel_soa.ccindel_soa.cc: In function ‘void fill_counter(bit32_t*, int, nst_bfa1_t*, void*)’: indel_soa.cc:42: warning: suggest parentheses around + or - inside shift indel_soa.cc:56: warning: suggest parentheses around + or - inside shift cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c maqmap.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c maqmap_conv.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o altchr.o altchr.cc cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c submap.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o rmdup.o rmdup.cc cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c simulate.c simulate.c: In function ‘simustat_core’: simulate.c:374: internal compiler error: in expand_expr_real_1, at expr.c:9199 Please submit a full bug report, with preprocessed source if appropriate. See <file:///usr/share/doc/gcc-4.3/README.Bugs> for instructions. make[2]: *** [simulate.o] Erreur 1 make[2]: quittant le répertoire « /home/charles/src/maq-0.6.7 » make[1]: *** [all] Erreur 2 make[1]: quittant le répertoire « /home/charles/src/maq-0.6.7 » make: *** [debian/stamp-makefile-build] Erreur 2 dpkg-buildpackage: échec: debian/rules build a produit une erreur de sortie de type 2 debuild: fatal error at line 1319: dpkg-buildpackage -rfakeroot -D -us -uc failed Have a nice day, -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
