Some answers on BLAST+ and T-Coffee... > > along with BLAST+ > > enables a key mode of operation in T-Coffee but currently the BLAST+ bit > > only works with our bio-linux-blast+ package. I'm continuing to work on > > this. > > Did you actually found out what BLAST+ is (I remember you were wondering > about the difference between blast2 and blast+).
I know about BLAST and BLAST+, but what I'm not sure about is the packaging and distribution. I think NCBI distribute BLAST both as a standalone download and as part of the monster NCBI-tools tarball which is already packaged (not in Debian-Med) by Aaron Ucko. But something is missing from that - certainly something needs to be changed to make T-Coffee happy - but I ran out of time looking at this in Lübeck. > > Apart from that we compiled the latest upstream (only on Ubuntu Lucid - > > someone needs to try it on Sid!) and also did a bit of tidying with help > > from Andreas. > > Just tell us were the stuff we should test is located (simply commit the > packaging stuff to SVN). Just to clarify, I meant the upstream of T-Coffee, not BLAST+. I committed everything to SVN before I packed up on Sunday. I can't imagine any reason why it wouldn't suitable for Sid but I don't want to promise it works as I didn't test it. Cheers, TIM -- To Err is human. To Arrr is Pirate! -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/1296728059.3433.1050.camel@barsukas
