Hi, some remarks about the new Wiki page concerning t-coffee:
> Pending and difficult/laborious: > * Blast+ (depends on ncbi-tools+, an effort has started in the Debian Med > svn repository) Added remark about relation to t-coffee on the tasks page and link to the Wiki page to get more information. > Pending an easy: > * TMalign (already in new queue) Added "Enhances: t-coffee" to debian/control of tm-align. > * muscle4 (http://www.drive5.com/muscle/muscle4.0_src.tar.gz) Hmmm, is this a new upstream version which just replaces muscle 3.x? If yes we need to fix the watch file (can do this, but need info if it is a replacement or an alternative). > * pcma (ftp://iole.swmed.edu/pub/PCMA/pcma.tar.gz) Added to tasks page. Seems technically easy to package, some volunteer to recheck th elicense with authors after clustalw is GPLed now??? > * fsa (http://sourceforge.net/projects/fsa/files/fsa-1.15.3.tar.gz/download/) Added to tasks page. License GPL v3, automake base - seems to be a simple target for a beginner. > * prank > (http://www.ebi.ac.uk/goldman-srv/prank/src/prank/prank.src.100303.tgz) Just on the tasks page because shipped with Bio-Linux. Any takers? > * sap (http://mathbio.nimr.mrc.ac.uk/download/sap-1.1.1.tar.gz) Added to tasks page (technically similar to fsa) > * probconsrna (http://probcons.stanford.edu/probconsRNA.tar.gz), the > compatibility with the [[DebPkg:probcons]] package's probcons-RNA binary is > unclear for the moment. Could you please clarify this and ping me anything needs to be added to the packaging or to the tasks page? > The Debian Med group is in direct continuous contact with the upstream > developers to help developing the distribution for a best-possible experience > for the users of T-Coffee on Debian and Ubuntu. Yup. :-) Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
