Hi Charles, I'm going to be pretty busy for about two weeks. I probably won't have time to look into this until then. If 1.5.65 compiles cleanly and works, there's no harm in uploading that in the mean time. I can take a look into the 2.0 log4j issue two weeks from now. The RollingFileAppender class is at least present in the jar:
$ strings /usr/share/java/log4j-1.2-1.2.15.jar |grep /RollingFileAppender.class$ org/apache/log4j/RollingFileAppender.class Cheers, Shaun On 27 June 2011 23:17, Charles Plessy <ple...@debian.org> wrote: > Dear Shaun and everybody, > > There is a major update of the IGV, which may be interesting to follow. > Unfortunately, I have tried to build it from source but could not produce a > JAR > file that can be executed. I have been reluctant to modify the master branch > of the Git repository where we manage the igv package, as there is a version > 1.5.65 on the upstream download area, but not in their changelog, which > suggests that there may be some maintainance. > > What shall I do: share work on version 2.0 in our master branch, make a > separate branch for the moment, or provide a temporary fork separately ? > > For the record, the error I get is: > > log4j:ERROR Could not find value for key log4j.appender.R > log4j:ERROR Could not instantiate appender named "R". > ERROR [2011-06-28 15:16:26,637] [DefaultExceptionHandler.java:42] [main] > Unhandled exception > java.lang.NoClassDefFoundError: org/apache/log4j/RollingFileAppender > at org.broad.igv.ui.Main.initializeLog(Main.java:225) > at org.broad.igv.ui.Main.initApplication(Main.java:94) > at org.broad.igv.ui.Main.main(Main.java:70) > Caused by: java.lang.ClassNotFoundException: > org.apache.log4j.RollingFileAppender > at java.net.URLClassLoader$1.run(URLClassLoader.java:217) > at java.security.AccessController.doPrivileged(Native Method) > at java.net.URLClassLoader.findClass(URLClassLoader.java:205) > at java.lang.ClassLoader.loadClass(ClassLoader.java:321) > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294) > at java.lang.ClassLoader.loadClass(ClassLoader.java:266) > at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:334) > ... 3 more > > > Have a nice day, -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/banlktik0_a4s8kkp_fs_r6wyh2ehpkb...@mail.gmail.com