----- Mail original ----- > De: "Andreas Tille" <[email protected]> > À: "Debian Med Project List" <[email protected]> > Envoyé: Mercredi 7 Décembre 2011 22:29:37 > Objet: Some tasks for people loving Ensembl package > [I keep some additional people in Bcc who might not yet subscribed and > I do not know whether their e-mail address should be exposed to > spammers] > > Hi, > > I just commited a very simple typo in an upstream script which should > be > reported (otherwise the script might stay broken). Is there any > volunteer to report this upstream? For the patch either see below[2] > or > point upstream to the location in SVN[1]. > > Further there is another problem which needs clarification from > upstream. > The script > > ensembl-variation/scripts/import/run.me > > is executable and most possibly a shell script but lacking a proper > shebang line. I admit it is a bit suspicious because it calls to > programs which most probably do not exist: > > 1. bsub (there are some scripts starting with bsub* but not exactly > this string) > 2. /usr/local/ensembl/bin/perl --> this should definitely replaced > by simply calling perl > > Is there any volunteer who would take over the job of contacting > upstream (possibly on behalf of the Debian Med team if this sounds > more > convincing) to submit the patch and clarify the issue of the run.me > script?
I do not have time right now to do so, I am on GMOD Chado stuff which takes quite a lot of time. However, if no one is volunteer in the meanwhile I will be glad to help (but will be on january) Olivier > > Kind regards > > Andreas. > > > [1] > http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ensembl/ensembl/trunk/debian/patches/fix_usr_bin_env_typo.patch?view=markup > [2] extract from commit mail: > ----- Forwarded message from Andreas Tille <[email protected]> > ----- > > Date: Wed, 7 Dec 2011 21:06:23 +0000 > From: Andreas Tille <[email protected]> > To: [email protected] > Subject: r8823 - in trunk/packages/ensembl/ensembl/trunk/debian: . > patches > > Author: tille > Date: 2011-12-07 21:06:23 +0000 (Wed, 07 Dec 2011) > New Revision: 8823 > > ... > Added: > trunk/packages/ensembl/ensembl/trunk/debian/patches/fix_usr_bin_env_typo.patch > =================================================================== > --- > trunk/packages/ensembl/ensembl/trunk/debian/patches/fix_usr_bin_env_typo.patch > (rev 0) > +++ > trunk/packages/ensembl/ensembl/trunk/debian/patches/fix_usr_bin_env_typo.patch > 2011-12-07 21:06:23 UTC (rev 8823) > @@ -0,0 +1,8 @@ > +--- > ensembl-65.orig/ensembl-variation/scripts/misc/generate_reg_file.pl > ++++ ensembl-65/ensembl-variation/scripts/misc/generate_reg_file.pl > +@@ -1,4 +1,4 @@ > +-#!/use/bin/env perl > ++#!/usr/bin/env perl > + > + use strict; > + use warnings; > > _______________________________________________ > > ----- End forwarded message ----- > > -- > http://fam-tille.de > > > -- > To UNSUBSCRIBE, email to [email protected] > with a subject of "unsubscribe". Trouble? Contact > [email protected] > Archive: http://lists.debian.org/[email protected] -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
