On Mon, Dec 12, 2011 at 11:35 AM, Thouis Jones <[email protected]> wrote:
> On Mon, Dec 12, 2011 at 11:20, Mathieu Malaterre
> <[email protected]> wrote:
>> I must be missing something, but it looks like CellProfiler.py is
>> still loading numpy directly from the main script:
>>
>> https://github.com/thouis/CellProfiler/blob/wrap-cppy-in-main/CellProfiler.py
>>
>> Am I looking at the right file ?
>
> You're looking at the right file, I just missed that change. I just
> pushed a new version with the import moved into main(). Is that
> sufficient to fix the bug?
Nope...
WARNING:root:Distributed support disabled: please install nuageux
Traceback (most recent call last):
File "/usr/share/pyshared/CellProfiler.py", line 495, in <module>
main()
File "/usr/share/pyshared/CellProfiler.py", line 169, in main
import numpy as np
...
$ cat CellProfiler.py:
...
def main():
options, args = parser.parse_args()
import numpy as np
#
# CellProfiler expects NaN as a result during calculation
#
np.seterr(all='ignore')
Thanks,
--
Mathieu
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