Hi Melissa, On Fri, May 25, 2012 at 4:17 PM, Melissa Linkert <[email protected]> wrote: > Hi Mathieu, > >> What I still do not really understand is that after a git clone of >> bioformat I can see I am getting the non-free >> ./jar/clibwrapper_jiio.jar; but I cannot find the shared lib anywhere. >> Should use download/install it separately ? > > The shared library is not required by Bio-Formats, and in fact having it > does not even improve functionality. So it is expected that the user > will download and install it themselves, if they feel that they need it.
I think I misunderstood your comment. Here is what I am doing: wget https://github.com/openmicroscopy/bioformats/tarball/v4.4.1 tar xvfz v4.4.1 cd openmicroscopy-bioformats-68cf74c find . -name \*.jar -delete export ANT_OPTS=-Dbuild.sysclasspath=first export CLASSPATH=/usr/share/java/velocity.jar:/usr/share/java/forms.jar:/usr/share/java/commons-logging.jar:/usr/share/java/ij.jar:/usr/share/java/slf4j-api.jar:/usr/share/java/bnd.jar:/usr/share/java/net.luminis.build.plugin.jar:/usr/share/java/testng.jar:/usr/share/java/ncCore-4.3.jar:/usr/share/java/ant-contrib.jar ant -f build.xml jar-jai which leads to error like: [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/common/PackageUtil.java:85: package com.sun.medialib.codec.jiio does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/clib/CLibImageReader.java:114: package com.sun.medialib.codec.jiio does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/clib/CLibImageReader.java:115: package com.sun.medialib.codec.jiio does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/clib/CLibImageWriter.java:108: package com.sun.medialib.codec.jiio does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/clib/CLibImageWriter.java:109: package com.sun.medialib.codec.jiio does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/jpeg/CLibJPEGImageReader.java:110: package com.sun.medialib.codec.jpeg does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/jpeg/CLibJPEGImageReader.java:111: package com.sun.medialib.codec.jiio does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/jpeg/CLibJPEGImageWriter.java:105: package com.sun.medialib.codec.jpeg does not exist [javac] /tmp/openmicroscopy-bioformats-68cf74c/components/forks/jai/build/src/com/sun/media/imageioimpl/plugins/jpeg/CLibJPEGImageWriter.java:106: package com.sun.medialib.codec.jiio does not exist Could you please let me (again?) how am I supposed to compile bioformats when I decided NOT to use 'clibwrapper_jiio.jar'. Thanks much, -- Mathieu -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/ca+7wusyqnwj7xmb01i780c2fvjg_slunjsdixf3my4hj6-1...@mail.gmail.com
