Hi, New version Tophat 2.0.6 is ready for upload. I used debian/get-orig-source to make sure SeqAn was removed correctly.
This is a bug fix realease. Upstream changelog: TopHat 2.0.6 release 11/02/2012 Version 2.0.6 is a maintenance release addressing some issues found in the 2.0.5 release: - corrected the indel finding algorithm that caused segmentation fault in certain cases (long_spanning_reads and tophat_reports) - fixed the Bowtie version checking code, adding support for newer, non-beta Bowtie2 versions - several minor fixes in the fusion alignment algorithm - fixed an incompatibility issue with Python versions older than 2.6 (restoring Python 2.4 compatibility) - fixed and improved the resuming option (-R/--resume) to better handle various failure/resume situations - added a warning about Bowtie1 and Bowtie2 index files in the same directory (causing trouble if they were built for different genomic sequences) Thanks, Carlos -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/cabgghblnplnktv23q5mkxwauxf9ilpawasmzrkggbsza6zw...@mail.gmail.com
