Hi Charles, thanks for your comments. Just an explanation for my engagement. I'd like to package
http://blends.debian.org/med/tasks/bio#gasic http://blends.debian.org/med/tasks/bio#fitgpc and my reasons are given in the according remarks there. On Tue, Feb 11, 2014 at 01:43:16PM +0900, Charles Plessy wrote: > Hi Andreas, > > I see that you are working on pysam, thank you for this ! > > If you are wondering why it was never uploaded, it is because of the extensive > code duplications with the samtools and tabix packages, which I could not try > to resolve because of my lack of understanding on how the C code is used in > python (in particular the relation between original code and the pxd or pyx > files). This became obvious in the according remarks you have given in debian/DRAFT. > See also https://lists.debian.org/debian-med/2012/12/msg00112.html, it looks > like Diane prepared a patch. I can confirm that I checked out Diane's repository (Diane in CC) but I do not see any patch for dealing with the code duplication. Diane, am I missing something? > Maybe I was overzealous, so if you feel like uploading, I definitely do not > mind ! I am using Debian and pysam in one of my tutorials for transcriptome > analysis > (https://github.com/charles-plessy/tutorial/search?q=pysam&ref=cmdform). My main goal was to get all tests working first. Once the tests are properly working I could try to get rid of code copies and if I manage to reproduce the tests this could be considered successful. I will keep you updated about the progress. Thanks for your input Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
