Hi all, My name is Albert Vilella, I recently joined the mailing list with the intention to learn more about debian-med to the point where I can start contributing some of my time to it. I am doing this out of my own interest in open-source, and it's not part of my day job.
Since at the moment I don't feel I can contribute much by pushing new packages into debian-med, I just thought I would try something mildly useful with the list of existing packages in bio-ngs (http://blends.debian.org/med/tasks/bio-ngs). What I did is to try and install them in a docker container (https://www.docker.io/) based on Ubuntu Precise and report on the results: kissplice, sra-toolkit, tophat, cufflinks, uc-echo were not found by apt-get. Qiime is a monster of a package, that attempts to even install grub on the docker container. The installation worked, even though I chose "continue without installing grub". Everything else went through "apt-get install" correctly. These are my 2c so far. Hope to do some packaging in the future. Cheers, Albert. -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/CAG0+gRNrqMOLx=jc5gfc_6cclfahg4v0hnk9qrax1slunnl...@mail.gmail.com
