Hi Jim, I'm writing you on behalf of the Debian Med team that has the goal to introduce official Debian packages of Free Software which is relevant in medicine and biology. Considering that you are the author of BLAT you might be interested in our biology task here
http://blends.debian.org/med/tasks/bio to get an overview what we are working on. You might have noticed that also your software BLAT is mentioned on this page http://blends.debian.org/med/tasks/bio#blat on out todo list. Please note that it needs to go in Debian's non-free section since it is restricted to scientific use only. The problem I currently have is that I try to run any test suite of software if it is available. So I also tried cd blat/test; make which quickly ends up in blat -verbose=0 throwback/target1.fa throwback/query1.fa throwback/test.psl Loaded 129433 letters in 1 sequences Searched 2050 bases in 1 sequences pslCheck -verbose=0 throwback/test.psl make: pslCheck: Command not found make: *** [tThrowback] Error 127 since there is no binary pslCheck. Did I missed something when creating the binaries from BLAT source since I only found a function int pslCheck(char *pslDesc, FILE* out, struct psl* psl) in file lib/psl.c but no such executable to call. Any hint how to run the test suite successfully? Kind regards and thanks for providing BLAT Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
