On Wed, Mar 5, 2014 at 12:28 PM, Andreas Tille <[email protected]> wrote: > > Hi again, > > when running biopython test suite I detected a wrong error message in > Tests/test_Cluster.py > > > ... > > import unittest > > try: > from Bio import Cluster > except ImportError: > from Bio import MissingPythonDependencyError > raise MissingPythonDependencyError("If you want to use Bio.Cluster, " > "install NumPy first and then " > "reinstall Biopython") > > try: > import numpy > except ImportError: > from Bio import MissingPythonDependencyError > raise MissingPythonDependencyError( > "Install NumPy if you want to use Bio.Cluster") > > ... > > > The first error message is misleading since the problem is not the > missing NumPy but rather Bio.Cluster seems to be broken. > > Is it OK if I send this kind of reports to you or should I rather use > the bug tracker or any mailing list. Sorry, I have not maintained the > package before and thus do not know the prefered way of communication. > > Kind regards > > Andreas.
Hi Andreas, Apologies for the later reply, I missed this email. I agree the import checks are in the wrong order, fixed on the master branch (which will be in the forthcoming Biopython 1.64): https://github.com/biopython/biopython/commit/3e0f34a2adc83a80864348f74cb034da58af905e Thanks, Peter -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/cakvj-_5ixcklvxecdm+k5xc+sg9fm8cg4rynkoh8a_0hwyb...@mail.gmail.com
