Hi Andreas, 2015-05-21 14:55 GMT+01:00 Andreas Tille <[email protected]>:
> > There are some missing dependencies: > > ... > ERROR: dependencies 'ape', 'quadprog', 'igraph', 'Matrix', 'nnls' are not > available for package 'phangorn' > > which you stumble upon when building in a chroot. We know that ipraph > and nnls are in the new queue but please adjust the Build-Depends and > Depends of the package to be ready once the packages are available. > As you say igraph and nnls are new but the others are already packages on debian: https://packages.debian.org/stable/gnu-r/r-cran-ape (manteined by Debia-Med Team: http://anonscm.debian.org/cgit/debian-med/r-cran-ape.git/) https://packages.debian.org/stable/gnu-r/r-cran-quadprog https://packages.debian.org/stable/gnu-r/r-cran-matrix I've built the package by installing the other dependencies not yet in stable debian and it worked ok (using debuild). So I'm a bit confused. Since we can not yet upload this package I used "UNRELEASED" as target > distribution and pushed this change. This is to make sure we will not > assume that this package was really uploaded when just looking at the > Git repository. > ok. > > Moreover there is a related publication for this package which is > mentioned in inst/CITATION. You even mention this in the long > description but this is not the correct place to do this since it is not > machine parseable. Please instead create a file > > debian/upstream/metadata > > I forgot about it. I've done it now. > > Finally I removed debian/files since it is an auto generated > file and should not be in Git. Please pull. > Ok, thanks. I've done the suggested changes. I hope now looks better. Let me know if more changes needs to be done. > > Thanks for your work so far and do not hesitate to commit more. ;-) > Sure. I'm working now on building another package from my own code (a tool to analyse protein sequences). However, this may take a while since it doesn't have any installation script yet. That's why I started with those packages first as my code depends on them. > BTW, if you (or somebody else) feel(s) the obligation on updating some > of our R packages - everybody in the team is more than welcome to push > updates to Git and I'll simply upload them. :-) > Sure! Cheers, Alba > > -- > To UNSUBSCRIBE, email to [email protected] > with a subject of "unsubscribe". Trouble? Contact > [email protected] > Archive: https://lists.debian.org/[email protected] > >
